{"sha": "7a486baf17f28360e5b100094e86d95ecc5c82bf", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2025-06-16T18:41:53.800Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"autoAcceptExactMatches": false, "searchContext": {"$": "Arthropods"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-06-16T18:41:53.800Z", "@description": "Describes external namesets merged into this study", "@id": "merged-namesets-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "MERGED_NAMESET_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"namesets": {"nameset": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2025-06-16T18:41:53.800Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node1076350", "@treesID": "trees2682", "@treeID": "tree6227", "@nodeID": "node1076350"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node1076351", "@treesID": "trees2682", "@treeID": "tree6227", "@nodeID": "node1076351"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": "otu401507", "@otusID": "otus2682", "@otuID": "otu401507"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu401533", "otu401534"], "refersTo": {"@top": "otus", "@idref": "otus2682", "@otusID": "otus2682"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["highestMintedElementIDs"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit", "^ot:reasonsToExcludeFromSynthesis"], "refersTo": {"@top": "trees", "@idref": "tree6227", "@treesID": "trees2682", "@treeID": "tree6227"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree6227"], "^ot:comment": "", "^ot:curatorName": ["Chris Owen", "Valeria Ensenat Rivera", "Mark T. Holder"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 28229, "^ot:focalCladeOTTTaxonName": "Procarididae", "^ot:otusElementOrder": ["otus2682"], "^ot:studyId": "pg_2682", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1111/j.1463-6409.2009.00410.x"}, "^ot:studyPublicationReference": "Bracken, H. D., De Grave, S., Toon, A., Felder, D. L., & Crandall, K. A. 2010. Phylogenetic position, systematic status, and divergence time of the Procarididea (Crustacea: Decapoda). Zoologica Scripta 39 (2): 198-212.", "^ot:studyYear": 2010, "^ot:tag": [], "^ot:treesElementOrder": ["trees2682"], "highestMintedElementIDs": {"agent": 0, "annotation": 0, "edge": 1076366, "message": 0, "node": 1076366, "otu": 401543, "otus": 2682, "tree": 6227, "trees": 2682}, "otusById": {"otus2682": {"otuById": {"otu401487": {"^ot:originalLabel": "Erobe2781", "^ot:ottId": 934798, "^ot:ottTaxonName": "Euastacus robertsi"}, "otu401488": {"^ot:originalLabel": "Abet1822", "^ot:ottId": 144107, "^ot:ottTaxonName": "Astacoides betsileoensis"}, "otu401489": {"^ot:originalLabel": "BcornutAT", "^ot:ottId": 965595, "^ot:ottTaxonName": "Barbicambarus cornutus"}, "otu401490": {"^ot:originalLabel": "AastacuAT", "^ot:ottId": 299971, "^ot:ottTaxonName": "Astacus astacus"}, "otu401491": {"^ot:originalLabel": "Hamericanu", "^ot:ottId": 28247, "^ot:ottTaxonName": "Homarus americanus"}, "otu401492": {"^ot:originalLabel": "Jedwardsii", "^ot:ottId": 557395, "^ot:ottTaxonName": "Jasus edwardsii"}, "otu401493": {"^ot:originalLabel": "Pele3210", "^ot:ottId": 535217, "^ot:ottTaxonName": "Palinurus elephas"}, "otu401494": {"^ot:originalLabel": "Sarctus", "^ot:ottId": 14033, "^ot:ottTaxonName": "Scyllarus arctus"}, "otu401495": {"^ot:originalLabel": "Cpagurus", "^ot:ottId": 706444, "^ot:ottTaxonName": "Cancer pagurus"}, "otu401496": {"^ot:originalLabel": "Csurg3087", "^ot:ottId": 745462, "^ot:ottTaxonName": "Carcinoplax suruguensis"}, "otu401497": {"^ot:originalLabel": "CgallusAT", "^ot:ottId": 828429, "^ot:ottTaxonName": "Calappa gallus"}, "otu401498": {"^ot:originalLabel": "Ccine3417", "^ot:ottId": 343354, "^ot:ottTaxonName": "Cyclograpsus cinereus"}, "otu401499": {"^ot:originalLabel": "EthspAT", "^ot:ottId": 693691, "^ot:ottTaxonName": "Ethusa sp. AT-2008"}, "otu401500": {"^ot:originalLabel": "PtyphopAT", "^ot:ottId": 969639, "^ot:ottTaxonName": "Polycheles typhlops"}, "otu401501": {"^ot:originalLabel": "Mrostrat31", "^ot:ottId": 343348, "^ot:ottTaxonName": "Galacantha rostrata"}, "otu401502": {"^ot:originalLabel": "EfunambAT", "^ot:ottId": 564112, "^ot:ottTaxonName": "Eumunida funambulus"}, "otu401503": {"^ot:originalLabel": "Aabta", "^ot:ottId": 381320, "^ot:ottTaxonName": "Aegla abtao"}, "otu401504": {"^ot:originalLabel": "Lsantolla", "^ot:ottId": 929442, "^ot:ottTaxonName": "Lithodes santolla"}, "otu401505": {"^ot:originalLabel": "PjeffreAT", "^ot:ottId": 918476, "^ot:ottTaxonName": "Pomatocheles jeffreysii"}, "otu401506": {"^ot:originalLabel": "Llou1852", "^ot:ottId": 92501, "^ot:ottTaxonName": "Lepidophthalmus louisianensis"}, "otu401507": {"^ot:originalLabel": "Smeri1865"}, "otu401508": {"^ot:originalLabel": "Calaxiusma", "^ot:ottId": 958647, "^ot:ottTaxonName": "Calaxius manningi"}, "otu401509": {"^ot:originalLabel": "Calastacus", "^ot:ottId": 432957, "^ot:ottTaxonName": "Calastacus crosnieri"}, "otu401510": {"^ot:originalLabel": "Laomediaas", "^ot:ottId": 1009586, "^ot:ottTaxonName": "Laomedia astacina"}, "otu401511": {"^ot:originalLabel": "Thalassina", "^ot:ottId": 170071, "^ot:ottTaxonName": "Thalassina anomala"}, "otu401512": {"^ot:originalLabel": "Austinogeb", "^ot:ottId": 958669, "^ot:ottTaxonName": "Austinogebia narutensis"}, "otu401513": {"^ot:originalLabel": "Shispi4276", "^ot:ottId": 279061, "^ot:ottTaxonName": "Stenopus hispidus"}, "otu401514": {"^ot:originalLabel": "Minorna427", "^ot:ottId": 745458, "^ot:ottTaxonName": "Microprosthema inornatum"}, "otu401515": {"^ot:originalLabel": "Ccran3052", "^ot:ottId": 497498, "^ot:ottTaxonName": "Crangon crangon"}, "otu401516": {"^ot:originalLabel": "Pnorve3053", "^ot:ottId": 351665, "^ot:ottTaxonName": "Pontophilus norvegicus"}, "otu401517": {"^ot:originalLabel": "Pbermun307", "^ot:ottId": 628962, "^ot:ottTaxonName": "Processa bermudensis"}, "otu401518": {"^ot:originalLabel": "Ndanaekc31", "^ot:ottId": 745460, "^ot:ottTaxonName": "Nikoides danae"}, "otu401519": {"^ot:originalLabel": "Hbifi3059", "^ot:ottId": 343350, "^ot:ottTaxonName": "Hippolyte bifidirostris"}, "otu401520": {"^ot:originalLabel": "Egaim3056", "^ot:ottId": 737577, "^ot:ottTaxonName": "Eualus gaimardii"}, "otu401521": {"^ot:originalLabel": "Mpilil3110", "^ot:ottId": 988658, "^ot:ottTaxonName": "Macrobrachium pilimanus"}, "otu401522": {"^ot:originalLabel": "Ccaementar", "^ot:ottId": 6521039, "^ot:ottTaxonName": "Macrobrachium caementarius"}, "otu401523": {"^ot:originalLabel": "Cmorelyi", "^ot:ottId": 933990, "^ot:ottTaxonName": "Creaseria morleyi"}, "otu401524": {"^ot:originalLabel": "Cton3068", "^ot:ottId": 861755, "^ot:ottTaxonName": "Palaemon tonkinensis"}, "otu401525": {"^ot:originalLabel": "Bharr3103", "^ot:ottId": 745469, "^ot:ottTaxonName": "Betaeus harrimani"}, "otu401526": {"^ot:originalLabel": "Metsp3109", "^ot:ottId": 745457, "^ot:ottTaxonName": "Metabetaeus sp. HDB-2009"}, "otu401527": {"^ot:originalLabel": "Pmontag314", "^ot:ottId": 685778, "^ot:ottTaxonName": "Pandalus montagui"}, "otu401528": {"^ot:originalLabel": "Ldebelius", "^ot:ottId": 92497, "^ot:ottTaxonName": "Lysmata debelius"}, "otu401529": {"^ot:originalLabel": "Abisulcata", "^ot:ottId": 383811, "^ot:ottTaxonName": "Atyoida bisulcata"}, "otu401530": {"^ot:originalLabel": "Tpearsei", "^ot:ottId": 87195, "^ot:ottTaxonName": "Typhlatya pearsei"}, "otu401531": {"^ot:originalLabel": "xiphocaris", "^ot:ottId": 332669, "^ot:ottTaxonName": "Xiphocaris elongata"}, "otu401532": {"^ot:originalLabel": "Dissp3108", "^ot:ottId": 221459, "^ot:ottTaxonName": "Discias sp. AT-2008"}, "otu401533": {"^ot:originalLabel": "Proca4274", "^ot:ottId": 601433, "^ot:ottTaxonName": "Procaris ascensionis"}, "otu401534": {"^ot:originalLabel": "Procar4273", "^ot:ottId": 601433, "^ot:ottTaxonName": "Procaris ascensionis"}, "otu401535": {"^ot:originalLabel": "Pmexican", "^ot:ottId": 512581, "^ot:ottTaxonName": "Procaris mexicana"}, "otu401536": {"^ot:originalLabel": "PsemicMLP", "^ot:ottId": 163892, "^ot:ottTaxonName": "Penaeus semisulcatus"}, "otu401537": {"^ot:originalLabel": "Fduor4282", "^ot:ottId": 6521015, "^ot:ottTaxonName": "Penaeus (Farfantepenaeus) duorarum"}, "otu401538": {"^ot:originalLabel": "Singe4279", "^ot:ottId": 163879, "^ot:ottTaxonName": "Sicyonia ingentis"}, "otu401539": {"^ot:originalLabel": "Afoli4280", "^ot:ottId": 733125, "^ot:ottTaxonName": "Aristeomorpha foliacea"}, "otu401540": {"^ot:originalLabel": "Sergiasp", "^ot:ottId": 235193, "^ot:ottTaxonName": "Sergia sp. HDB-2008"}, "otu401541": {"^ot:originalLabel": "Eeximia", "^ot:ottId": 974948, "^ot:ottTaxonName": "Euphausia eximia"}, "otu401542": {"^ot:originalLabel": "Nematosp", "^ot:ottId": 6521046, "^ot:ottTaxonName": "Hansarsia"}, "otu401543": {"^ot:originalLabel": "Lmac3832", "^ot:ottId": 98210, "^ot:ottTaxonName": "Lysiosquillina maculata"}}}}, "treesById": {"trees2682": {"@otus": "otus2682", "^ot:treeElementOrder": ["tree6227"], "treeById": {"tree6227": {"@label": "Procarididea", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:substitutionCount", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "Bayesian inference ", "^ot:inGroupClade": "node1076255", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:reasonsToExcludeFromSynthesis": [{"$": "Makes Pleocyemata polyphyletic. There are other studies that support monophyletic Pleocyemata."}], "^ot:rootNodeId": "node1076254", "^ot:specifiedRoot": "node1076254", "^ot:tag": ["choose me", "ingroup added;"], "^ot:unrootedTree": false, "edgeBySourceId": {"node1076254": {"edge1076255": {"@length": 0.0584225, "@source": "node1076254", "@target": "node1076255"}, "edge1076362": {"@length": 0.11684500000000009, "@source": "node1076254", "@target": "node1076362"}}, "node1076255": {"edge1076256": {"@length": 0.00500899999999993, "@source": "node1076255", "@target": "node1076256"}, "edge1076311": {"@length": 0.02345200000000003, "@source": "node1076255", "@target": "node1076311"}}, "node1076256": {"edge1076257": {"@length": 0.008755999999999986, "@source": "node1076256", "@target": "node1076257"}, "edge1076308": {"@length": 0.275103, "@source": "node1076256", "@target": "node1076308"}}, "node1076257": {"edge1076258": {"@length": 0.006805999999999979, "@source": "node1076257", "@target": "node1076258"}, "edge1076295": {"@length": 0.0030689999999999884, "@source": "node1076257", "@target": "node1076295"}}, "node1076258": {"edge1076259": {"@length": 0.0068949999999999845, "@source": "node1076258", "@target": "node1076259"}, "edge1076286": {"@length": 0.029377000000000097, "@source": "node1076258", "@target": "node1076286"}}, "node1076259": {"edge1076260": {"@length": 0.0025290000000000035, "@source": "node1076259", "@target": "node1076260"}, "edge1076285": {"@length": 0.17546699999999993, "@source": "node1076259", "@target": "node1076285"}}, "node1076260": {"edge1076261": {"@length": 0.003746999999999945, "@source": "node1076260", "@target": "node1076261"}, "edge1076276": {"@length": 0.067967, "@source": "node1076260", "@target": "node1076276"}}, "node1076261": {"edge1076262": {"@length": 0.01831499999999997, "@source": "node1076261", "@target": "node1076262"}, "edge1076271": {"@length": 0.05441400000000007, "@source": "node1076261", "@target": "node1076271"}}, "node1076262": {"edge1076263": {"@length": 0.02157600000000004, "@source": "node1076262", "@target": "node1076263"}, "edge1076270": {"@length": 0.08461399999999997, "@source": "node1076262", "@target": "node1076270"}}, "node1076263": {"edge1076264": {"@length": 0.021710000000000007, "@source": "node1076263", "@target": "node1076264"}, "edge1076267": {"@length": 0.053304999999999936, "@source": "node1076263", "@target": "node1076267"}}, "node1076264": {"edge1076265": {"@length": 0.09912700000000008, "@source": "node1076264", "@target": "node1076265"}, "edge1076266": {"@length": 0.07346799999999998, "@source": "node1076264", "@target": "node1076266"}}, "node1076267": {"edge1076268": {"@length": 0.014851000000000059, "@source": "node1076267", "@target": "node1076268"}, "edge1076269": {"@length": 0.024938000000000016, "@source": "node1076267", "@target": "node1076269"}}, "node1076271": {"edge1076272": {"@length": 0.014732999999999885, "@source": "node1076271", "@target": "node1076272"}, "edge1076275": {"@length": 0.03957799999999989, "@source": "node1076271", "@target": "node1076275"}}, "node1076272": {"edge1076273": {"@length": 0.04656600000000011, "@source": "node1076272", "@target": "node1076273"}, "edge1076274": {"@length": 0.046627000000000085, "@source": "node1076272", "@target": "node1076274"}}, "node1076276": {"edge1076277": {"@length": 0.007728999999999986, "@source": "node1076276", "@target": "node1076277"}, "edge1076284": {"@length": 0.12241999999999997, "@source": "node1076276", "@target": "node1076284"}}, "node1076277": {"edge1076278": {"@length": 0.010685999999999973, "@source": "node1076277", "@target": "node1076278"}, "edge1076281": {"@length": 0.014780999999999933, "@source": "node1076277", "@target": "node1076281"}}, "node1076278": {"edge1076279": {"@length": 0.030613, "@source": "node1076278", "@target": "node1076279"}, "edge1076280": {"@length": 0.047819999999999974, "@source": "node1076278", "@target": "node1076280"}}, "node1076281": {"edge1076282": {"@length": 0.045892000000000044, "@source": "node1076281", "@target": "node1076282"}, "edge1076283": {"@length": 0.045958000000000054, "@source": "node1076281", "@target": "node1076283"}}, "node1076286": {"edge1076287": {"@length": 0.006368999999999958, "@source": "node1076286", "@target": "node1076287"}, "edge1076292": {"@length": 0.017921000000000076, "@source": "node1076286", "@target": "node1076292"}}, "node1076287": {"edge1076288": {"@length": 0.014396999999999993, "@source": "node1076287", "@target": "node1076288"}, "edge1076291": {"@length": 0.08390200000000003, "@source": "node1076287", "@target": "node1076291"}}, "node1076288": {"edge1076289": {"@length": 0.10389000000000004, "@source": "node1076288", "@target": "node1076289"}, "edge1076290": {"@length": 0.07125599999999999, "@source": "node1076288", "@target": "node1076290"}}, "node1076292": {"edge1076293": {"@length": 0.09253999999999996, "@source": "node1076292", "@target": "node1076293"}, "edge1076294": {"@length": 0.10545700000000002, "@source": "node1076292", "@target": "node1076294"}}, "node1076295": {"edge1076296": {"@length": 0.071268, "@source": "node1076295", "@target": "node1076296"}, "edge1076303": {"@length": 0.034386999999999945, "@source": "node1076295", "@target": "node1076303"}}, "node1076296": {"edge1076297": {"@length": 0.015189000000000008, "@source": "node1076296", "@target": "node1076297"}, "edge1076300": {"@length": 0.05349000000000004, "@source": "node1076296", "@target": "node1076300"}}, "node1076297": {"edge1076298": {"@length": 0.0322349999999999, "@source": "node1076297", "@target": "node1076298"}, "edge1076299": {"@length": 0.04965900000000001, "@source": "node1076297", "@target": "node1076299"}}, "node1076300": {"edge1076301": {"@length": 0.06502599999999992, "@source": "node1076300", "@target": "node1076301"}, "edge1076302": {"@length": 0.06214699999999995, "@source": "node1076300", "@target": "node1076302"}}, "node1076303": {"edge1076304": {"@length": 0.01143700000000003, "@source": "node1076303", "@target": "node1076304"}, "edge1076307": {"@length": 0.07962100000000005, "@source": "node1076303", "@target": "node1076307"}}, "node1076304": {"edge1076305": {"@length": 0.07184199999999996, "@source": "node1076304", "@target": "node1076305"}, "edge1076306": {"@length": 0.07162500000000005, "@source": "node1076304", "@target": "node1076306"}}, "node1076308": {"edge1076309": {"@length": 0.10741800000000001, "@source": "node1076308", "@target": "node1076309"}, "edge1076310": {"@length": 0.06356, "@source": "node1076308", "@target": "node1076310"}}, "node1076311": {"edge1076312": {"@length": 0.10568100000000002, "@source": "node1076311", "@target": "node1076312"}, "edge1076353": {"@length": 0.22790600000000005, "@source": "node1076311", "@target": "node1076353"}}, "node1076312": {"edge1076313": {"@length": 0.148492, "@source": "node1076312", "@target": "node1076313"}, "edge1076348": {"@length": 0.07497999999999994, "@source": "node1076312", "@target": "node1076348"}}, "node1076313": {"edge1076314": {"@length": 0.032725000000000004, "@source": "node1076313", "@target": "node1076314"}, "edge1076347": {"@length": 0.22672200000000003, "@source": "node1076313", "@target": "node1076347"}}, "node1076314": {"edge1076315": {"@length": 0.009950999999999988, "@source": "node1076314", "@target": "node1076315"}, "edge1076342": {"@length": 0.12876499999999996, "@source": "node1076314", "@target": "node1076342"}}, "node1076315": {"edge1076316": {"@length": 0.011261000000000021, "@source": "node1076315", "@target": "node1076316"}, "edge1076339": {"@length": 0.010191999999999979, "@source": "node1076315", "@target": "node1076339"}}, "node1076316": {"edge1076317": {"@length": 0.003981000000000012, "@source": "node1076316", "@target": "node1076317"}, "edge1076328": {"@length": 0.034582, "@source": "node1076316", "@target": "node1076328"}}, "node1076317": {"edge1076318": {"@length": 0.006608000000000003, "@source": "node1076317", "@target": "node1076318"}, "edge1076325": {"@length": 0.018784000000000023, "@source": "node1076317", "@target": "node1076325"}}, "node1076318": {"edge1076319": {"@length": 0.08770699999999998, "@source": "node1076318", "@target": "node1076319"}, "edge1076322": {"@length": 0.11075500000000005, "@source": "node1076318", "@target": "node1076322"}}, "node1076319": {"edge1076320": {"@length": 0.06323199999999995, "@source": "node1076319", "@target": "node1076320"}, "edge1076321": {"@length": 0.056347999999999954, "@source": "node1076319", "@target": "node1076321"}}, "node1076322": {"edge1076323": {"@length": 0.021962000000000037, "@source": "node1076322", "@target": "node1076323"}, "edge1076324": {"@length": 0.06281800000000004, "@source": "node1076322", "@target": "node1076324"}}, "node1076325": {"edge1076326": {"@length": 0.081156, "@source": "node1076325", "@target": "node1076326"}, "edge1076327": {"@length": 0.14155299999999998, "@source": "node1076325", "@target": "node1076327"}}, "node1076328": {"edge1076329": {"@length": 0.055456000000000005, "@source": "node1076328", "@target": "node1076329"}, "edge1076336": {"@length": 0.049346, "@source": "node1076328", "@target": "node1076336"}}, "node1076329": {"edge1076330": {"@length": 0.012245000000000006, "@source": "node1076329", "@target": "node1076330"}, "edge1076335": {"@length": 0.05929499999999999, "@source": "node1076329", "@target": "node1076335"}}, "node1076330": {"edge1076331": {"@length": 0.021886000000000017, "@source": "node1076330", "@target": "node1076331"}, "edge1076334": {"@length": 0.05892400000000003, "@source": "node1076330", "@target": "node1076334"}}, "node1076331": {"edge1076332": {"@length": 0.026307999999999998, "@source": "node1076331", "@target": "node1076332"}, "edge1076333": {"@length": 0.020411999999999986, "@source": "node1076331", "@target": "node1076333"}}, "node1076336": {"edge1076337": {"@length": 0.04999099999999995, "@source": "node1076336", "@target": "node1076337"}, "edge1076338": {"@length": 0.163553, "@source": "node1076336", "@target": "node1076338"}}, "node1076339": {"edge1076340": {"@length": 0.056479, "@source": "node1076339", "@target": "node1076340"}, "edge1076341": {"@length": 0.09637099999999998, "@source": "node1076339", "@target": "node1076341"}}, "node1076342": {"edge1076343": {"@length": 0.054584999999999995, "@source": "node1076342", "@target": "node1076343"}, "edge1076346": {"@length": 0.144077, "@source": "node1076342", "@target": "node1076346"}}, "node1076343": {"edge1076344": {"@length": 0.05623299999999998, "@source": "node1076343", "@target": "node1076344"}, "edge1076345": {"@length": 0.12147299999999994, "@source": "node1076343", "@target": "node1076345"}}, "node1076348": {"edge1076349": {"@length": 0.02532600000000007, "@source": "node1076348", "@target": "node1076349"}, "edge1076352": {"@length": 0.024749000000000132, "@source": "node1076348", "@target": "node1076352"}}, "node1076349": {"edge1076350": {"@length": 0.00014900000000006575, "@source": "node1076349", "@target": "node1076350"}, "edge1076351": {"@length": 5.899999999992023e-05, "@source": "node1076349", "@target": "node1076351"}}, "node1076353": {"edge1076354": {"@length": 0.076492, "@source": "node1076353", "@target": "node1076354"}, "edge1076359": {"@length": 0.028274999999999995, "@source": "node1076353", "@target": "node1076359"}}, "node1076354": {"edge1076355": {"@length": 0.07932800000000001, "@source": "node1076354", "@target": "node1076355"}, "edge1076358": {"@length": 0.43262199999999995, "@source": "node1076354", "@target": "node1076358"}}, "node1076355": {"edge1076356": {"@length": 0.009031000000000011, "@source": "node1076355", "@target": "node1076356"}, "edge1076357": {"@length": 0.02235799999999999, "@source": "node1076355", "@target": "node1076357"}}, "node1076359": {"edge1076360": {"@length": 0.05534800000000001, "@source": "node1076359", "@target": "node1076360"}, "edge1076361": {"@length": 0.276948, "@source": "node1076359", "@target": "node1076361"}}, "node1076362": {"edge1076363": {"@length": 0.12962600000000002, "@source": "node1076362", "@target": "node1076363"}, "edge1076366": {"@length": 0.12548000000000004, "@source": "node1076362", "@target": "node1076366"}}, "node1076363": {"edge1076364": {"@length": 0.04180899999999993, "@source": "node1076363", "@target": "node1076364"}, "edge1076365": {"@length": 0.01998699999999992, "@source": "node1076363", "@target": "node1076365"}}}, "nodeById": {"node1076254": {"@root": true}, "node1076255": {}, "node1076256": {}, "node1076257": {}, "node1076258": {}, "node1076259": {}, "node1076260": {}, "node1076261": {}, "node1076262": {}, "node1076263": {}, "node1076264": {}, "node1076265": {"@otu": "otu401487"}, "node1076266": {"@otu": "otu401488"}, "node1076267": {}, "node1076268": {"@otu": "otu401489"}, "node1076269": {"@otu": "otu401490"}, "node1076270": {"@otu": "otu401491"}, "node1076271": {}, "node1076272": {}, "node1076273": {"@otu": "otu401492"}, "node1076274": {"@otu": "otu401493"}, "node1076275": {"@otu": "otu401494"}, "node1076276": {}, "node1076277": {}, "node1076278": {}, "node1076279": {"@otu": "otu401495"}, "node1076280": {"@otu": "otu401496"}, "node1076281": {}, "node1076282": {"@otu": "otu401497"}, "node1076283": {"@otu": "otu401498"}, "node1076284": {"@otu": "otu401499"}, "node1076285": {"@otu": "otu401500"}, "node1076286": {}, "node1076287": {}, "node1076288": {}, "node1076289": {"@otu": "otu401501"}, "node1076290": {"@otu": "otu401502"}, "node1076291": {"@otu": "otu401503"}, "node1076292": {}, "node1076293": {"@otu": "otu401504"}, "node1076294": {"@otu": "otu401505"}, "node1076295": {}, "node1076296": {}, "node1076297": {}, "node1076298": {"@otu": "otu401506"}, "node1076299": {"@otu": "otu401507"}, "node1076300": {}, "node1076301": {"@otu": "otu401508"}, "node1076302": {"@otu": "otu401509"}, "node1076303": {}, "node1076304": {}, "node1076305": {"@otu": "otu401510"}, "node1076306": {"@otu": "otu401511"}, "node1076307": {"@otu": "otu401512"}, "node1076308": {}, "node1076309": {"@otu": "otu401513"}, "node1076310": {"@otu": "otu401514"}, "node1076311": {}, "node1076312": {}, "node1076313": {}, "node1076314": {}, "node1076315": {}, "node1076316": {}, "node1076317": {}, "node1076318": {}, "node1076319": {}, "node1076320": {"@otu": "otu401515"}, "node1076321": {"@otu": "otu401516"}, "node1076322": {}, "node1076323": {"@otu": "otu401517"}, "node1076324": {"@otu": "otu401518"}, "node1076325": {}, "node1076326": {"@otu": "otu401519"}, "node1076327": {"@otu": "otu401520"}, "node1076328": {}, "node1076329": {}, "node1076330": {}, "node1076331": {}, "node1076332": {"@otu": "otu401521"}, "node1076333": {"@otu": "otu401522"}, "node1076334": {"@otu": "otu401523"}, "node1076335": {"@otu": "otu401524"}, "node1076336": {}, "node1076337": {"@otu": "otu401525"}, "node1076338": {"@otu": "otu401526"}, "node1076339": {}, "node1076340": {"@otu": "otu401527"}, "node1076341": {"@otu": "otu401528"}, "node1076342": {}, "node1076343": {}, "node1076344": {"@otu": "otu401529"}, "node1076345": {"@otu": "otu401530"}, "node1076346": {"@otu": "otu401531"}, "node1076347": {"@otu": "otu401532"}, "node1076348": {}, "node1076349": {}, "node1076350": {"@otu": "otu401533", "^ot:isTaxonExemplar": true}, "node1076351": {"@otu": "otu401534", "^ot:isTaxonExemplar": false}, "node1076352": {"@otu": "otu401535"}, "node1076353": {}, "node1076354": {}, "node1076355": {}, "node1076356": {"@otu": "otu401536"}, "node1076357": {"@otu": "otu401537"}, "node1076358": {"@otu": "otu401538"}, "node1076359": {}, "node1076360": {"@otu": "otu401539"}, "node1076361": {"@otu": "otu401540"}, "node1076362": {}, "node1076363": {}, "node1076364": {"@otu": "otu401541"}, "node1076365": {"@otu": "otu401542"}, "node1076366": {"@otu": "otu401543"}}}}}}}}, "branch2sha": {"master": "7a486baf17f28360e5b100094e86d95ecc5c82bf"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "db54f1cfded78e46ca507e491c48e03d990fb167", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 17 Dec 2025 19:02:25 +0000", "date_ISO_8601": "2025-12-17 19:02:25 +0000", "relative_date": "3 months ago", "message_subject": "unmapped older mapping to Neocallichirus mericeae", "message_body": "(Update document 'pg_2682' via OpenTree API)"}, {"id": "22299c594553fde64c90762c5fb72470e4f5431b", "author_name": "Valeria Ensenat Rivera", "author_email": "valeria.ensenatrivera@gwmail.gwu.edu", "date": "Mon, 16 Jun 2025 19:50:37 +0000", "date_ISO_8601": "2025-06-16 19:50:37 +0000", "relative_date": "9 months ago", "message_subject": "Taxons updated using WoRMS. June 16, 2025", "message_body": "(Update document 'pg_2682' via OpenTree API)"}, {"id": "01d3576a464f00bc433e1908a5bd358c55227a13", "author_name": "Valeria Ensenat Rivera", "author_email": "valeria.ensenatrivera@gwmail.gwu.edu", "date": "Mon, 16 Jun 2025 19:48:08 +0000", "date_ISO_8601": "2025-06-16 19:48:08 +0000", "relative_date": "9 months ago", "message_subject": "Taxons updated using WoRMS. June 16, 2025", "message_body": "(Update document 'pg_2682' via OpenTree API)"}, {"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "f8a738aeda20a73750847484e110a85c7a3e0a12", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 10 Jun 2014 23:36:42 -0500", "date_ISO_8601": "2014-06-10 23:36:42 -0500", "relative_date": "12 years ago", "message_subject": "Migrating info from gcmdr to nexsons", "message_body": "using peyotl d69c8b180fce7703c7203a0b51712eab57e2988c\ndev/decorate_pg_studies_with_gcmdr_info.py\nto set:\n  ^ot:candidateTreeForSynthesis\n  ^ot:specifiedRoot, and\n  ^ot:unrootedTree\nproperties based on the use of the trees for synthesis study\nlists in gcmdr commit 35bf307e72bed4f59724762dde4a12965abcea92"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}