{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "0.0.0", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "otus": {"@id": "otus2695", "otu": [{"@id": "otu404673", "@about": "#otu404673", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Ursus ursinus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 297463}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Melursus ursinus"}]}, {"@id": "otu404674", "@about": "#otu404674", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Ursus arctos"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 872567}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Ursus arctos"}]}, {"@id": "otu404675", "@about": "#otu404675", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Ursus maritimus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 10732}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Ursus maritimus"}]}, {"@id": "otu404676", "@about": "#otu404676", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Ursus spelaeus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 89827}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Ursus spelaeus"}]}, {"@id": "otu404677", "@about": "#otu404677", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Ursus thibetanus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 872580}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Ursus thibetanus"}]}, {"@id": "otu404678", "@about": "#otu404678", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Ursus americanus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 872577}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Ursus americanus"}]}, {"@id": "otu404679", "@about": "#otu404679", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Ursus malayanus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 679701}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Helarctos malayanus"}]}, {"@id": "otu404680", "@about": "#otu404680", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Arctodus simus"}]}, {"@id": "otu404681", "@about": "#otu404681", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tremarctos ornatus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 679667}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tremarctos ornatus"}]}, {"@id": "otu404682", "@about": "#otu404682", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Ailuropoda melanoleuca"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 872573}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Ailuropoda melanoleuca"}]}, {"@id": "otu404683", "@about": "#otu404683", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Phoca vitulina"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 698422}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Phoca vitulina"}]}], "@about": "#otus2695"}, "trees": {"@otus": "otus2695", "@id": "trees2695", "tree": [{"@xsi:type": "nex:FloatTree", "node": [{"@root": true, "@id": "node1083612", "@about": "#node1083612"}, {"@id": "node1083613", "@about": "#node1083613"}, {"@id": "node1083614", "@about": "#node1083614"}, {"@id": "node1083615", "@about": "#node1083615"}, {"@otu": "otu404673", "@id": "node1083616", "@about": "#node1083616", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083617", "@about": "#node1083617"}, {"@id": "node1083618", "@about": "#node1083618"}, {"@id": "node1083619", "@about": "#node1083619"}, {"@otu": "otu404674", "@id": "node1083620", "@about": "#node1083620", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404675", "@id": "node1083621", "@about": "#node1083621", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404676", "@id": "node1083622", "@about": "#node1083622", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083623", "@about": "#node1083623"}, {"@id": "node1083624", "@about": "#node1083624"}, {"@otu": "otu404677", "@id": "node1083625", "@about": "#node1083625", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404678", "@id": "node1083626", "@about": "#node1083626", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404679", "@id": "node1083627", "@about": "#node1083627", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083628", "@about": "#node1083628"}, {"@otu": "otu404680", "@id": "node1083629", "@about": "#node1083629", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404681", "@id": "node1083630", "@about": "#node1083630", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404682", "@id": "node1083631", "@about": "#node1083631", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404683", "@id": "node1083632", "@about": "#node1083632", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}], "edge": [{"@length": 17.4283087786, "@source": "node1083612", "@target": "node1083613", "@id": "edge1083613", "@about": "#edge1083613"}, {"@length": 6.823479061383722, "@source": "node1083613", "@target": "node1083614", "@id": "edge1083614", "@about": "#edge1083614"}, {"@length": 8.285268635002875, "@source": "node1083614", "@target": "node1083615", "@id": "edge1083615", "@about": "#edge1083615"}, {"@length": 6.032174351519207, "@source": "node1083615", "@target": "node1083616", "@id": "edge1083616", "@about": "#edge1083616"}, {"@length": 0.4261394804564107, "@source": "node1083615", "@target": "node1083617", "@id": "edge1083617", "@about": "#edge1083617"}, {"@length": 2.439367978515433, "@source": "node1083617", "@target": "node1083618", "@id": "edge1083618", "@about": "#edge1083618"}, {"@length": 2.2702287582688365, "@source": "node1083618", "@target": "node1083619", "@id": "edge1083619", "@about": "#edge1083619"}, {"@length": 0.896438134278527, "@source": "node1083619", "@target": "node1083620", "@id": "edge1083620", "@about": "#edge1083620"}, {"@length": 0.896438134278527, "@source": "node1083619", "@target": "node1083621", "@id": "edge1083621", "@about": "#edge1083621"}, {"@length": 3.1666668925473633, "@source": "node1083618", "@target": "node1083622", "@id": "edge1083622", "@about": "#edge1083622"}, {"@length": 0.7053831556381267, "@source": "node1083617", "@target": "node1083623", "@id": "edge1083623", "@about": "#edge1083623"}, {"@length": 0.3493459159941237, "@source": "node1083623", "@target": "node1083624", "@id": "edge1083624", "@about": "#edge1083624"}, {"@length": 4.551305799430546, "@source": "node1083624", "@target": "node1083625", "@id": "edge1083625", "@about": "#edge1083625"}, {"@length": 4.551305799430546, "@source": "node1083624", "@target": "node1083626", "@id": "edge1083626", "@about": "#edge1083626"}, {"@length": 4.90065171542467, "@source": "node1083623", "@target": "node1083627", "@id": "edge1083627", "@about": "#edge1083627"}, {"@length": 7.779722578805387, "@source": "node1083614", "@target": "node1083628", "@id": "edge1083628", "@about": "#edge1083628"}, {"@length": 6.537720407716694, "@source": "node1083628", "@target": "node1083629", "@id": "edge1083629", "@about": "#edge1083629"}, {"@length": 6.537720407716694, "@source": "node1083628", "@target": "node1083630", "@id": "edge1083630", "@about": "#edge1083630"}, {"@length": 21.140922047905804, "@source": "node1083613", "@target": "node1083631", "@id": "edge1083631", "@about": "#edge1083631"}, {"@length": 38.56923082648581, "@source": "node1083612", "@target": "node1083632", "@id": "edge1083632", "@about": "#edge1083632"}], "@id": "tree6250", "@about": "#tree6250", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthDescription", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthMode", "@datatype": "xsd:string", "$": "ot:posteriorSupport"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthTimeUnit", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatedType", "@datatype": "xsd:string", "$": "Bayesian MCC time-calibrated"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:inGroupClade", "@datatype": "xsd:string", "$": "node1083613"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:outGroupEdge", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:specifiedRoot", "@datatype": "xsd:string", "$": "node1083612"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:tag", "@datatype": "xsd:string", "$": "choose me;"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:unrootedTree", "@datatype": "xsd:boolean", "$": false}]}, {"@xsi:type": "nex:FloatTree", "node": [{"@root": true, "@id": "node1083633", "@about": "#node1083633"}, {"@otu": "otu404682", "@id": "node1083634", "@about": "#node1083634", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083635", "@about": "#node1083635"}, {"@id": "node1083636", "@about": "#node1083636"}, {"@otu": "otu404681", "@id": "node1083637", "@about": "#node1083637", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404680", "@id": "node1083638", "@about": "#node1083638", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083639", "@about": "#node1083639"}, {"@otu": "otu404673", "@id": "node1083640", "@about": "#node1083640", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083641", "@about": "#node1083641"}, {"@id": "node1083642", "@about": "#node1083642"}, {"@otu": "otu404676", "@id": "node1083643", "@about": "#node1083643", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083644", "@about": "#node1083644"}, {"@otu": "otu404675", "@id": "node1083645", "@about": "#node1083645", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404674", "@id": "node1083646", "@about": "#node1083646", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083647", "@about": "#node1083647"}, {"@otu": "otu404679", "@id": "node1083648", "@about": "#node1083648", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083649", "@about": "#node1083649"}, {"@otu": "otu404677", "@id": "node1083650", "@about": "#node1083650", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404678", "@id": "node1083651", "@about": "#node1083651", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}], "edge": [{"@length": 0.17311817092607099, "@source": "node1083633", "@target": "node1083634", "@id": "edge1083634", "@about": "#edge1083634"}, {"@length": 0.08655908546303549, "@source": "node1083633", "@target": "node1083635", "@id": "edge1083635", "@about": "#edge1083635"}, {"@length": 0.0814601164430527, "@source": "node1083635", "@target": "node1083636", "@id": "edge1083636", "@about": "#edge1083636"}, {"@length": 0.07554423738794208, "@source": "node1083636", "@target": "node1083637", "@id": "edge1083637", "@about": "#edge1083637"}, {"@length": 0.0620624075550697, "@source": "node1083636", "@target": "node1083638", "@id": "edge1083638", "@about": "#edge1083638"}, {"@length": 0.10251622945291236, "@source": "node1083635", "@target": "node1083639", "@id": "edge1083639", "@about": "#edge1083639"}, {"@length": 0.06263764295323959, "@source": "node1083639", "@target": "node1083640", "@id": "edge1083640", "@about": "#edge1083640"}, {"@length": 0.005343108003767583, "@source": "node1083639", "@target": "node1083641", "@id": "edge1083641", "@about": "#edge1083641"}, {"@length": 0.027831426008278537, "@source": "node1083641", "@target": "node1083642", "@id": "edge1083642", "@about": "#edge1083642"}, {"@length": 0.03395853474188537, "@source": "node1083642", "@target": "node1083643", "@id": "edge1083643", "@about": "#edge1083643"}, {"@length": 0.022262323777573756, "@source": "node1083642", "@target": "node1083644", "@id": "edge1083644", "@about": "#edge1083644"}, {"@length": 0.010513186673886676, "@source": "node1083644", "@target": "node1083645", "@id": "edge1083645", "@about": "#edge1083645"}, {"@length": 0.010736341373757119, "@source": "node1083644", "@target": "node1083646", "@id": "edge1083646", "@about": "#edge1083646"}, {"@length": 0.006248781238221202, "@source": "node1083641", "@target": "node1083647", "@id": "edge1083647", "@about": "#edge1083647"}, {"@length": 0.05783792874468713, "@source": "node1083647", "@target": "node1083648", "@id": "edge1083648", "@about": "#edge1083648"}, {"@length": 0.005694364288556297, "@source": "node1083647", "@target": "node1083649", "@id": "edge1083649", "@about": "#edge1083649"}, {"@length": 0.046753295299486075, "@source": "node1083649", "@target": "node1083650", "@id": "edge1083650", "@about": "#edge1083650"}, {"@length": 0.052876491286652116, "@source": "node1083649", "@target": "node1083651", "@id": "edge1083651", "@about": "#edge1083651"}], "@id": "tree6251", "@about": "#tree6251", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthDescription", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthMode", "@datatype": "xsd:string", "$": "ot:substitutionCount"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthTimeUnit", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatedType", "@datatype": "xsd:string", "$": "ML"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:inGroupClade", "@datatype": "xsd:string", "$": "node1083633"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:outGroupEdge", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:specifiedRoot", "@datatype": "xsd:string", "$": ""}]}, {"@xsi:type": "nex:FloatTree", "node": [{"@root": true, "@id": "node1083652", "@about": "#node1083652"}, {"@otu": "otu404683", "@id": "node1083653", "@about": "#node1083653", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083654", "@about": "#node1083654"}, {"@otu": "otu404682", "@id": "node1083655", "@about": "#node1083655", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083656", "@about": "#node1083656"}, {"@id": "node1083657", "@about": "#node1083657"}, {"@otu": "otu404681", "@id": "node1083658", "@about": "#node1083658", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404680", "@id": "node1083659", "@about": "#node1083659", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083660", "@about": "#node1083660"}, {"@otu": "otu404673", "@id": "node1083661", "@about": "#node1083661", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083662", "@about": "#node1083662"}, {"@id": "node1083663", "@about": "#node1083663"}, {"@otu": "otu404679", "@id": "node1083664", "@about": "#node1083664", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083665", "@about": "#node1083665"}, {"@otu": "otu404678", "@id": "node1083666", "@about": "#node1083666", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404677", "@id": "node1083667", "@about": "#node1083667", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083668", "@about": "#node1083668"}, {"@otu": "otu404676", "@id": "node1083669", "@about": "#node1083669", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083670", "@about": "#node1083670"}, {"@otu": "otu404674", "@id": "node1083671", "@about": "#node1083671", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404675", "@id": "node1083672", "@about": "#node1083672", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}], "edge": [{"@length": 0.122656, "@source": "node1083652", "@target": "node1083653", "@id": "edge1083653", "@about": "#edge1083653"}, {"@length": 0.061328, "@source": "node1083652", "@target": "node1083654", "@id": "edge1083654", "@about": "#edge1083654"}, {"@length": 0.090667, "@source": "node1083654", "@target": "node1083655", "@id": "edge1083655", "@about": "#edge1083655"}, {"@length": 0.027003, "@source": "node1083654", "@target": "node1083656", "@id": "edge1083656", "@about": "#edge1083656"}, {"@length": 0.034775, "@source": "node1083656", "@target": "node1083657", "@id": "edge1083657", "@about": "#edge1083657"}, {"@length": 0.05005799999999999, "@source": "node1083657", "@target": "node1083658", "@id": "edge1083658", "@about": "#edge1083658"}, {"@length": 0.04435, "@source": "node1083657", "@target": "node1083659", "@id": "edge1083659", "@about": "#edge1083659"}, {"@length": 0.048261, "@source": "node1083656", "@target": "node1083660", "@id": "edge1083660", "@about": "#edge1083660"}, {"@length": 0.039244, "@source": "node1083660", "@target": "node1083661", "@id": "edge1083661", "@about": "#edge1083661"}, {"@length": 0.014592999999999995, "@source": "node1083660", "@target": "node1083662", "@id": "edge1083662", "@about": "#edge1083662"}, {"@length": 0.006954000000000002, "@source": "node1083662", "@target": "node1083663", "@id": "edge1083663", "@about": "#edge1083663"}, {"@length": 0.043365, "@source": "node1083663", "@target": "node1083664", "@id": "edge1083664", "@about": "#edge1083664"}, {"@length": 0.009368000000000001, "@source": "node1083663", "@target": "node1083665", "@id": "edge1083665", "@about": "#edge1083665"}, {"@length": 0.03995499999999999, "@source": "node1083665", "@target": "node1083666", "@id": "edge1083666", "@about": "#edge1083666"}, {"@length": 0.03619, "@source": "node1083665", "@target": "node1083667", "@id": "edge1083667", "@about": "#edge1083667"}, {"@length": 0.020997000000000002, "@source": "node1083662", "@target": "node1083668", "@id": "edge1083668", "@about": "#edge1083668"}, {"@length": 0.028352000000000002, "@source": "node1083668", "@target": "node1083669", "@id": "edge1083669", "@about": "#edge1083669"}, {"@length": 0.018947000000000006, "@source": "node1083668", "@target": "node1083670", "@id": "edge1083670", "@about": "#edge1083670"}, {"@length": 0.010186, "@source": "node1083670", "@target": "node1083671", "@id": "edge1083671", "@about": "#edge1083671"}, {"@length": 0.010038999999999992, "@source": "node1083670", "@target": "node1083672", "@id": "edge1083672", "@about": "#edge1083672"}], "@id": "tree6252", "@about": "#tree6252", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthDescription", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthMode", "@datatype": "xsd:string", "$": "ot:substitutionCount"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthTimeUnit", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatedType", "@datatype": "xsd:string", "$": "Bayesian consensus (no D-loop)"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:inGroupClade", "@datatype": "xsd:string", "$": "node1083654"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:outGroupEdge", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:specifiedRoot", "@datatype": "xsd:string", "$": ""}]}, {"@xsi:type": "nex:FloatTree", "node": [{"@root": true, "@id": "node1083673", "@about": "#node1083673"}, {"@otu": "otu404683", "@id": "node1083674", "@about": "#node1083674", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083675", "@about": "#node1083675"}, {"@otu": "otu404682", "@id": "node1083676", "@about": "#node1083676", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083677", "@about": "#node1083677"}, {"@id": "node1083678", "@about": "#node1083678"}, {"@otu": "otu404680", "@id": "node1083679", "@about": "#node1083679", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404681", "@id": "node1083680", "@about": "#node1083680", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083681", "@about": "#node1083681"}, {"@otu": "otu404673", "@id": "node1083682", "@about": "#node1083682", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083683", "@about": "#node1083683"}, {"@id": "node1083684", "@about": "#node1083684"}, {"@otu": "otu404679", "@id": "node1083685", "@about": "#node1083685", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083686", "@about": "#node1083686"}, {"@otu": "otu404678", "@id": "node1083687", "@about": "#node1083687", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404677", "@id": "node1083688", "@about": "#node1083688", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083689", "@about": "#node1083689"}, {"@otu": "otu404676", "@id": "node1083690", "@about": "#node1083690", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1083691", "@about": "#node1083691"}, {"@otu": "otu404674", "@id": "node1083692", "@about": "#node1083692", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu404675", "@id": "node1083693", "@about": "#node1083693", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}], "edge": [{"@length": 0.584977, "@source": "node1083673", "@target": "node1083674", "@id": "edge1083674", "@about": "#edge1083674"}, {"@length": 0.2924885, "@source": "node1083673", "@target": "node1083675", "@id": "edge1083675", "@about": "#edge1083675"}, {"@length": 0.22702500000000003, "@source": "node1083675", "@target": "node1083676", "@id": "edge1083676", "@about": "#edge1083676"}, {"@length": 0.04871700000000001, "@source": "node1083675", "@target": "node1083677", "@id": "edge1083677", "@about": "#edge1083677"}, {"@length": 0.07499800000000001, "@source": "node1083677", "@target": "node1083678", "@id": "edge1083678", "@about": "#edge1083678"}, {"@length": 0.06269099999999994, "@source": "node1083678", "@target": "node1083679", "@id": "edge1083679", "@about": "#edge1083679"}, {"@length": 0.07663599999999998, "@source": "node1083678", "@target": "node1083680", "@id": "edge1083680", "@about": "#edge1083680"}, {"@length": 0.10122900000000001, "@source": "node1083677", "@target": "node1083681", "@id": "edge1083681", "@about": "#edge1083681"}, {"@length": 0.05955699999999997, "@source": "node1083681", "@target": "node1083682", "@id": "edge1083682", "@about": "#edge1083682"}, {"@length": 0.009614000000000011, "@source": "node1083681", "@target": "node1083683", "@id": "edge1083683", "@about": "#edge1083683"}, {"@length": 0.007189000000000001, "@source": "node1083683", "@target": "node1083684", "@id": "edge1083684", "@about": "#edge1083684"}, {"@length": 0.05866199999999999, "@source": "node1083684", "@target": "node1083685", "@id": "edge1083685", "@about": "#edge1083685"}, {"@length": 0.006162999999999974, "@source": "node1083684", "@target": "node1083686", "@id": "edge1083686", "@about": "#edge1083686"}, {"@length": 0.053688000000000013, "@source": "node1083686", "@target": "node1083687", "@id": "edge1083687", "@about": "#edge1083687"}, {"@length": 0.04738999999999999, "@source": "node1083686", "@target": "node1083688", "@id": "edge1083688", "@about": "#edge1083688"}, {"@length": 0.028474999999999973, "@source": "node1083683", "@target": "node1083689", "@id": "edge1083689", "@about": "#edge1083689"}, {"@length": 0.034211999999999965, "@source": "node1083689", "@target": "node1083690", "@id": "edge1083690", "@about": "#edge1083690"}, {"@length": 0.022235999999999978, "@source": "node1083689", "@target": "node1083691", "@id": "edge1083691", "@about": "#edge1083691"}, {"@length": 0.010871999999999993, "@source": "node1083691", "@target": "node1083692", "@id": "edge1083692", "@about": "#edge1083692"}, {"@length": 0.01049, "@source": "node1083691", "@target": "node1083693", "@id": "edge1083693", "@about": "#edge1083693"}], "@id": "tree6253", "@about": "#tree6253", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthDescription", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthMode", "@datatype": "xsd:string", "$": "ot:substitutionCount"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthTimeUnit", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatedType", "@datatype": "xsd:string", "$": "Bayesian consensus (partitioned)"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:inGroupClade", "@datatype": "xsd:string", "$": "node1083675"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:outGroupEdge", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:specifiedRoot", "@datatype": "xsd:string", "$": ""}]}], "@about": "#trees2695"}, "@about": "#study", "meta": [{"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}, "@about": "#peyotl-validator"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:agents"}, {"annotation": [{"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": "otu404680", "@otusID": "otus2695", "@otuID": "otu404680"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:dataDeposit"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}], "@about": "#peyotl-validator-event"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:annotationEvents"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:candidateTreeForSynthesis", "@datatype": "xsd:string", "$": "tree6250"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatorName", "@datatype": "xsd:string", "$": "Joseph Brown"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalClade", "@datatype": "xsd:int", "$": 297458}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalCladeOTTTaxonName", "@datatype": "xsd:string", "$": "Ursidae"}, {"message": [], "@xsi:type": "nex:LiteralMeta", "@property": "ot:messages"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyId", "@datatype": "xsd:string", "$": "pg_2695"}, {"@href": "http://dx.doi.org/10.1186/1471-2148-8-220", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:studyPublication"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyPublicationReference", "@datatype": "xsd:string", "$": "Krause, Johannes, Tina Unger, Aline No\u00e7on, Anna-Sapfo Malaspinas, Sergios-Orestis Kolokotronis, Mathias Stiller, Leopoldo Soibelzon, Helen Spriggs, Paul H Dear, Adrian W Briggs, Sarah CE Bray, Stephen J O'Brien, Gernot Rabeder, Paul Matheus, Alan Cooper, Montgomery Slatkin, Svante P\u00e4\u00e4bo, Michael Hofreiter. 2008. Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. BMC Evolutionary Biology 8 (1): 220."}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyYear", "@datatype": "xsd:int", "$": 2008}]}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "f8a738aeda20a73750847484e110a85c7a3e0a12", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 10 Jun 2014 23:36:42 -0500", "date_ISO_8601": "2014-06-10 23:36:42 -0500", "relative_date": "12 years ago", "message_subject": "Migrating info from gcmdr to nexsons", "message_body": "using peyotl d69c8b180fce7703c7203a0b51712eab57e2988c\ndev/decorate_pg_studies_with_gcmdr_info.py\nto set:\n  ^ot:candidateTreeForSynthesis\n  ^ot:specifiedRoot, and\n  ^ot:unrootedTree\nproperties based on the use of the trees for synthesis study\nlists in gcmdr commit 35bf307e72bed4f59724762dde4a12965abcea92"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}