{"sha": "2aa180baef3c5e313da1e7f09c83ce2c0467b457", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2014-07-03T19:18:43.731Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "All life"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2014-07-03T19:18:43.731Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu405145", "otu405152"], "refersTo": {"@top": "otus", "@idref": "otus2701", "@otusID": "otus2701"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree6270", "@treesID": "trees2701", "@treeID": "tree6270"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree6271", "@treesID": "trees2701", "@treeID": "tree6271"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": ["otu405145", "otu405152"], "@otusID": "otus2701", "@otuID": ["otu405145", "otu405152"]}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree6271"], "^ot:comment": "", "^ot:curatorName": ["Romina Gazis", "Stephen Smith", "Jonathan A Rees"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 634628, "^ot:focalCladeOTTTaxonName": "Basidiomycota", "^ot:messages": {"message": []}, "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["otus2701"], "^ot:studyId": "pg_2701", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1126/science.1221748"}, "^ot:studyPublicationReference": "Floudas, Dimitrios, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Angel T. Mart\u00ednez et al. \"The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.\" Science 336, no. 6089 (2012): 1715-1719.", "^ot:studyYear": 2012, "^ot:tag": ["BEAST", "genome: nucleus"], "^ot:treesElementOrder": ["trees2701"], "otusById": {"otus2701": {"otuById": {"otu405144": {"^ot:originalLabel": "ASPNI", "^ot:ottId": 300201, "^ot:ottTaxonName": "Aspergillus niger"}, "otu405145": {"^ot:originalLabel": "TRIRE"}, "otu405146": {"^ot:originalLabel": "CRYPA", "^ot:ottId": 103005, "^ot:ottTaxonName": "Cryphonectria parasitica"}, "otu405147": {"^ot:originalLabel": "STANO", "^ot:ottId": 562295, "^ot:ottTaxonName": "Phaeosphaeria nodorum"}, "otu405148": {"^ot:originalLabel": "PICST", "^ot:ottId": 334015, "^ot:ottTaxonName": "Scheffersomyces stipitis"}, "otu405149": {"^ot:originalLabel": "PHYBL", "^ot:ottId": 735973, "^ot:ottTaxonName": "Phycomyces blakesleeanus"}, "otu405150": {"^ot:originalLabel": "BATDE", "^ot:ottId": 858873, "^ot:ottTaxonName": "Batrachochytrium dendrobatidis"}, "otu405151": {"^ot:originalLabel": "SPORO", "^ot:ottId": 590457, "^ot:ottTaxonName": "Sporobolomyces roseus"}, "otu405152": {"^ot:originalLabel": "MELLA"}, "otu405153": {"^ot:originalLabel": "USTMA", "^ot:ottId": 285447, "^ot:ottTaxonName": "Ustilago maydis"}, "otu405154": {"^ot:originalLabel": "MALGL", "^ot:ottId": 604323, "^ot:ottTaxonName": "Malassezia globosa"}, "otu405155": {"^ot:originalLabel": "TREME", "^ot:ottId": 133073, "^ot:ottTaxonName": "Tremella mesenterica"}, "otu405156": {"^ot:originalLabel": "CRYNE", "^ot:ottId": 634633, "^ot:ottTaxonName": "Cryptococcus neoformans"}, "otu405157": {"^ot:originalLabel": "DACSP", "^ot:ottId": 531308, "^ot:ottTaxonName": "Dacryopinax"}, "otu405158": {"^ot:originalLabel": "FOMME", "^ot:ottId": 958306, "^ot:ottTaxonName": "Fomitiporia mediterranea"}, "otu405159": {"^ot:originalLabel": "PHACH", "^ot:ottId": 5299626, "^ot:ottTaxonName": "Phanerodontia chrysosporium"}, "otu405160": {"^ot:originalLabel": "WOLCO", "^ot:ottId": 5299874, "^ot:ottTaxonName": "Wolfiporia extensa"}, "otu405161": {"^ot:originalLabel": "POSPL", "^ot:ottId": 1069955, "^ot:ottTaxonName": "Rhodonia placenta"}, "otu405162": {"^ot:originalLabel": "FOMPI", "^ot:ottId": 417422, "^ot:ottTaxonName": "Fomitopsis pinicola"}, "otu405163": {"^ot:originalLabel": "TRAVE", "^ot:ottId": 581141, "^ot:ottTaxonName": "Trametes versicolor"}, "otu405164": {"^ot:originalLabel": "DICSQ", "^ot:ottId": 741212, "^ot:ottTaxonName": "Dichomitus squalens"}, "otu405165": {"^ot:originalLabel": "PUNST", "^ot:ottId": 7507, "^ot:ottTaxonName": "Punctularia strigosozonata"}, "otu405166": {"^ot:originalLabel": "GLOTR", "^ot:ottId": 493749, "^ot:ottTaxonName": "Gloeophyllum trabeum"}, "otu405167": {"^ot:originalLabel": "STEHI", "^ot:ottId": 943200, "^ot:ottTaxonName": "Stereum hirsutum"}, "otu405168": {"^ot:originalLabel": "HETAN", "^ot:ottId": 1072058, "^ot:ottTaxonName": "Heterobasidion annosum"}, "otu405169": {"^ot:originalLabel": "SCHCO", "^ot:ottId": 8357, "^ot:ottTaxonName": "Schizophyllum commune"}, "otu405170": {"^ot:originalLabel": "LACBI", "^ot:ottId": 985685, "^ot:ottTaxonName": "Laccaria bicolor"}, "otu405171": {"^ot:originalLabel": "COPCI", "^ot:ottId": 737441, "^ot:ottTaxonName": "Coprinopsis cinerea"}, "otu405172": {"^ot:originalLabel": "SERLA", "^ot:ottId": 385505, "^ot:ottTaxonName": "Serpula lacrymans"}, "otu405173": {"^ot:originalLabel": "CONPU", "^ot:ottId": 429072, "^ot:ottTaxonName": "Coniophora puteana"}, "otu405174": {"^ot:originalLabel": "AURDE", "^ot:ottId": 345003, "^ot:ottTaxonName": "Auricularia delicata"}}}}, "treesById": {"trees2701": {"@otus": "otus2701", "^ot:treeElementOrder": ["tree6270", "tree6271"], "treeById": {"tree6270": {"@label": "Untitled (tree6270)", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "71gene_BEAST", "^ot:inGroupClade": "", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node1085282", "^ot:specifiedRoot": "", "^ot:tag": [], "^ot:unrootedTree": true, "edgeBySourceId": {"node1085282": {"edge1085283": {"@length": 0.118039, "@source": "node1085282", "@target": "node1085283"}, "edge1085284": {"@length": 0.181225, "@source": "node1085282", "@target": "node1085284"}, "edge1085285": {"@length": 0.01327, "@source": "node1085282", "@target": "node1085285"}}, "node1085285": {"edge1085286": {"@length": 0.089431, "@source": "node1085285", "@target": "node1085286"}, "edge1085289": {"@length": 0.162002, "@source": "node1085285", "@target": "node1085289"}}, "node1085286": {"edge1085287": {"@length": 0.073693, "@source": "node1085286", "@target": "node1085287"}, "edge1085288": {"@length": 0.081655, "@source": "node1085286", "@target": "node1085288"}}, "node1085289": {"edge1085290": {"@length": 0.502951, "@source": "node1085289", "@target": "node1085290"}, "edge1085291": {"@length": 0.207072, "@source": "node1085289", "@target": "node1085291"}}, "node1085291": {"edge1085292": {"@length": 0.099469, "@source": "node1085291", "@target": "node1085292"}, "edge1085295": {"@length": 0.146854, "@source": "node1085291", "@target": "node1085295"}}, "node1085292": {"edge1085293": {"@length": 0.197131, "@source": "node1085292", "@target": "node1085293"}, "edge1085294": {"@length": 0.415961, "@source": "node1085292", "@target": "node1085294"}}, "node1085295": {"edge1085296": {"@length": 0.076824, "@source": "node1085295", "@target": "node1085296"}, "edge1085299": {"@length": 0.013776, "@source": "node1085295", "@target": "node1085299"}}, "node1085296": {"edge1085297": {"@length": 0.185197, "@source": "node1085296", "@target": "node1085297"}, "edge1085298": {"@length": 0.226328, "@source": "node1085296", "@target": "node1085298"}}, "node1085299": {"edge1085300": {"@length": 0.141269, "@source": "node1085299", "@target": "node1085300"}, "edge1085303": {"@length": 0.039963, "@source": "node1085299", "@target": "node1085303"}}, "node1085300": {"edge1085301": {"@length": 0.108517, "@source": "node1085300", "@target": "node1085301"}, "edge1085302": {"@length": 0.211402, "@source": "node1085300", "@target": "node1085302"}}, "node1085303": {"edge1085304": {"@length": 0.199583, "@source": "node1085303", "@target": "node1085304"}, "edge1085307": {"@length": 0.044423, "@source": "node1085303", "@target": "node1085307"}}, "node1085304": {"edge1085305": {"@length": 0.079289, "@source": "node1085304", "@target": "node1085305"}, "edge1085306": {"@length": 0.063812, "@source": "node1085304", "@target": "node1085306"}}, "node1085307": {"edge1085308": {"@length": 0.140143, "@source": "node1085307", "@target": "node1085308"}, "edge1085309": {"@length": 0.027391, "@source": "node1085307", "@target": "node1085309"}}, "node1085309": {"edge1085310": {"@length": 0.013492, "@source": "node1085309", "@target": "node1085310"}, "edge1085341": {"@length": 0.116576, "@source": "node1085309", "@target": "node1085341"}}, "node1085310": {"edge1085311": {"@length": 0.063966, "@source": "node1085310", "@target": "node1085311"}, "edge1085312": {"@length": 0.014696, "@source": "node1085310", "@target": "node1085312"}}, "node1085312": {"edge1085313": {"@length": 0.005268, "@source": "node1085312", "@target": "node1085313"}, "edge1085316": {"@length": 0.002077, "@source": "node1085312", "@target": "node1085316"}}, "node1085313": {"edge1085314": {"@length": 0.052746, "@source": "node1085313", "@target": "node1085314"}, "edge1085315": {"@length": 0.039144, "@source": "node1085313", "@target": "node1085315"}}, "node1085316": {"edge1085317": {"@length": 0.008866, "@source": "node1085316", "@target": "node1085317"}, "edge1085328": {"@length": 0.002474, "@source": "node1085316", "@target": "node1085328"}}, "node1085317": {"edge1085318": {"@length": 0.031276, "@source": "node1085317", "@target": "node1085318"}, "edge1085319": {"@length": 0.005318, "@source": "node1085317", "@target": "node1085319"}}, "node1085319": {"edge1085320": {"@length": 0.008596, "@source": "node1085319", "@target": "node1085320"}, "edge1085325": {"@length": 0.016184, "@source": "node1085319", "@target": "node1085325"}}, "node1085320": {"edge1085321": {"@length": 0.002444, "@source": "node1085320", "@target": "node1085321"}, "edge1085324": {"@length": 0.023771, "@source": "node1085320", "@target": "node1085324"}}, "node1085321": {"edge1085322": {"@length": 0.019993, "@source": "node1085321", "@target": "node1085322"}, "edge1085323": {"@length": 0.020425, "@source": "node1085321", "@target": "node1085323"}}, "node1085325": {"edge1085326": {"@length": 0.019324, "@source": "node1085325", "@target": "node1085326"}, "edge1085327": {"@length": 0.019202, "@source": "node1085325", "@target": "node1085327"}}, "node1085328": {"edge1085329": {"@length": 0.019834, "@source": "node1085328", "@target": "node1085329"}, "edge1085332": {"@length": 0.004819, "@source": "node1085328", "@target": "node1085332"}}, "node1085329": {"edge1085330": {"@length": 0.031714, "@source": "node1085329", "@target": "node1085330"}, "edge1085331": {"@length": 0.029343, "@source": "node1085329", "@target": "node1085331"}}, "node1085332": {"edge1085333": {"@length": 0.009433, "@source": "node1085332", "@target": "node1085333"}, "edge1085338": {"@length": 0.010706, "@source": "node1085332", "@target": "node1085338"}}, "node1085333": {"edge1085334": {"@length": 0.058017, "@source": "node1085333", "@target": "node1085334"}, "edge1085335": {"@length": 0.008993, "@source": "node1085333", "@target": "node1085335"}}, "node1085335": {"edge1085336": {"@length": 0.027447, "@source": "node1085335", "@target": "node1085336"}, "edge1085337": {"@length": 0.042748, "@source": "node1085335", "@target": "node1085337"}}, "node1085338": {"edge1085339": {"@length": 0.027184, "@source": "node1085338", "@target": "node1085339"}, "edge1085340": {"@length": 0.045623, "@source": "node1085338", "@target": "node1085340"}}}, "nodeById": {"node1085282": {"@root": true}, "node1085283": {"@otu": "otu405144"}, "node1085284": {"@otu": "otu405147"}, "node1085285": {}, "node1085286": {}, "node1085287": {"@otu": "otu405145"}, "node1085288": {"@otu": "otu405146"}, "node1085289": {}, "node1085290": {"@otu": "otu405148"}, "node1085291": {}, "node1085292": {}, "node1085293": {"@otu": "otu405149"}, "node1085294": {"@otu": "otu405150"}, "node1085295": {}, "node1085296": {}, "node1085297": {"@otu": "otu405151"}, "node1085298": {"@otu": "otu405152"}, "node1085299": {}, "node1085300": {}, "node1085301": {"@otu": "otu405153"}, "node1085302": {"@otu": "otu405154"}, "node1085303": {}, "node1085304": {}, "node1085305": {"@otu": "otu405155"}, "node1085306": {"@otu": "otu405156"}, "node1085307": {}, "node1085308": {"@otu": "otu405157"}, "node1085309": {}, "node1085310": {}, "node1085311": {"@otu": "otu405158"}, "node1085312": {}, "node1085313": {}, "node1085314": {"@otu": "otu405165"}, "node1085315": {"@otu": "otu405166"}, "node1085316": {}, "node1085317": {}, "node1085318": {"@otu": "otu405159"}, "node1085319": {}, "node1085320": {}, "node1085321": {}, "node1085322": {"@otu": "otu405160"}, "node1085323": {"@otu": "otu405161"}, "node1085324": {"@otu": "otu405162"}, "node1085325": {}, "node1085326": {"@otu": "otu405163"}, "node1085327": {"@otu": "otu405164"}, "node1085328": {}, "node1085329": {}, "node1085330": {"@otu": "otu405167"}, "node1085331": {"@otu": "otu405168"}, "node1085332": {}, "node1085333": {}, "node1085334": {"@otu": "otu405169"}, "node1085335": {}, "node1085336": {"@otu": "otu405170"}, "node1085337": {"@otu": "otu405171"}, "node1085338": {}, "node1085339": {"@otu": "otu405172"}, "node1085340": {"@otu": "otu405173"}, "node1085341": {"@otu": "otu405174"}}}, "tree6271": {"@label": "Untitled (tree6271)", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "26gene_BEAST_rooted", "^ot:inGroupClade": "node1085346", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node1085342", "^ot:specifiedRoot": "node1085342", "^ot:tag": ["genome", "Choose me"], "^ot:unrootedTree": false, "edgeBySourceId": {"node1085342": {"edge1085343": {"@length": 0.1094305, "@source": "node1085342", "@target": "node1085343"}, "edge1085402": {"@length": 0.21886100000000003, "@source": "node1085342", "@target": "node1085402"}}, "node1085343": {"edge1085344": {"@length": 0.12366700000000003, "@source": "node1085343", "@target": "node1085344"}, "edge1085345": {"@length": 0.052181, "@source": "node1085343", "@target": "node1085345"}}, "node1085345": {"edge1085346": {"@length": 0.065362, "@source": "node1085345", "@target": "node1085346"}, "edge1085393": {"@length": 0.09706300000000001, "@source": "node1085345", "@target": "node1085393"}}, "node1085346": {"edge1085347": {"@length": 0.034497, "@source": "node1085346", "@target": "node1085347"}, "edge1085350": {"@length": 0.005261000000000016, "@source": "node1085346", "@target": "node1085350"}}, "node1085347": {"edge1085348": {"@length": 0.09926099999999999, "@source": "node1085347", "@target": "node1085348"}, "edge1085349": {"@length": 0.110091, "@source": "node1085347", "@target": "node1085349"}}, "node1085350": {"edge1085351": {"@length": 0.06265199999999999, "@source": "node1085350", "@target": "node1085351"}, "edge1085354": {"@length": 0.013892999999999989, "@source": "node1085350", "@target": "node1085354"}}, "node1085351": {"edge1085352": {"@length": 0.054047999999999985, "@source": "node1085351", "@target": "node1085352"}, "edge1085353": {"@length": 0.10156300000000001, "@source": "node1085351", "@target": "node1085353"}}, "node1085354": {"edge1085355": {"@length": 0.098769, "@source": "node1085354", "@target": "node1085355"}, "edge1085358": {"@length": 0.023888999999999994, "@source": "node1085354", "@target": "node1085358"}}, "node1085355": {"edge1085356": {"@length": 0.045059000000000016, "@source": "node1085355", "@target": "node1085356"}, "edge1085357": {"@length": 0.03539500000000001, "@source": "node1085355", "@target": "node1085357"}}, "node1085358": {"edge1085359": {"@length": 0.07198499999999997, "@source": "node1085358", "@target": "node1085359"}, "edge1085360": {"@length": 0.013454999999999995, "@source": "node1085358", "@target": "node1085360"}}, "node1085360": {"edge1085361": {"@length": 0.010323000000000027, "@source": "node1085360", "@target": "node1085361"}, "edge1085392": {"@length": 0.06759700000000002, "@source": "node1085360", "@target": "node1085392"}}, "node1085361": {"edge1085362": {"@length": 0.03378999999999999, "@source": "node1085361", "@target": "node1085362"}, "edge1085363": {"@length": 0.007695000000000007, "@source": "node1085361", "@target": "node1085363"}}, "node1085363": {"edge1085364": {"@length": 0.005016999999999994, "@source": "node1085363", "@target": "node1085364"}, "edge1085375": {"@length": 0.0010930000000000106, "@source": "node1085363", "@target": "node1085375"}}, "node1085364": {"edge1085365": {"@length": 0.013305999999999985, "@source": "node1085364", "@target": "node1085365"}, "edge1085366": {"@length": 0.0028779999999999917, "@source": "node1085364", "@target": "node1085366"}}, "node1085366": {"edge1085367": {"@length": 0.004193000000000002, "@source": "node1085366", "@target": "node1085367"}, "edge1085372": {"@length": 0.008882999999999974, "@source": "node1085366", "@target": "node1085372"}}, "node1085367": {"edge1085368": {"@length": 0.00171300000000002, "@source": "node1085367", "@target": "node1085368"}, "edge1085371": {"@length": 0.00984299999999999, "@source": "node1085367", "@target": "node1085371"}}, "node1085368": {"edge1085369": {"@length": 0.00864100000000001, "@source": "node1085368", "@target": "node1085369"}, "edge1085370": {"@length": 0.009282999999999986, "@source": "node1085368", "@target": "node1085370"}}, "node1085372": {"edge1085373": {"@length": 0.009016000000000024, "@source": "node1085372", "@target": "node1085373"}, "edge1085374": {"@length": 0.009489999999999998, "@source": "node1085372", "@target": "node1085374"}}, "node1085375": {"edge1085376": {"@length": 0.0026519999999999877, "@source": "node1085375", "@target": "node1085376"}, "edge1085379": {"@length": 0.001823000000000019, "@source": "node1085375", "@target": "node1085379"}}, "node1085376": {"edge1085377": {"@length": 0.028494999999999993, "@source": "node1085376", "@target": "node1085377"}, "edge1085378": {"@length": 0.018373000000000028, "@source": "node1085376", "@target": "node1085378"}}, "node1085379": {"edge1085380": {"@length": 0.009616000000000013, "@source": "node1085379", "@target": "node1085380"}, "edge1085383": {"@length": 0.0033460000000000156, "@source": "node1085379", "@target": "node1085383"}}, "node1085380": {"edge1085381": {"@length": 0.014415000000000011, "@source": "node1085380", "@target": "node1085381"}, "edge1085382": {"@length": 0.016205999999999998, "@source": "node1085380", "@target": "node1085382"}}, "node1085383": {"edge1085384": {"@length": 0.0041999999999999815, "@source": "node1085383", "@target": "node1085384"}, "edge1085389": {"@length": 0.005890000000000006, "@source": "node1085383", "@target": "node1085389"}}, "node1085384": {"edge1085385": {"@length": 0.033111, "@source": "node1085384", "@target": "node1085385"}, "edge1085386": {"@length": 0.004419000000000006, "@source": "node1085384", "@target": "node1085386"}}, "node1085386": {"edge1085387": {"@length": 0.014905000000000002, "@source": "node1085386", "@target": "node1085387"}, "edge1085388": {"@length": 0.019828000000000012, "@source": "node1085386", "@target": "node1085388"}}, "node1085389": {"edge1085390": {"@length": 0.014793, "@source": "node1085389", "@target": "node1085390"}, "edge1085391": {"@length": 0.02485599999999999, "@source": "node1085389", "@target": "node1085391"}}, "node1085393": {"edge1085394": {"@length": 0.349117, "@source": "node1085393", "@target": "node1085394"}, "edge1085395": {"@length": 0.07978600000000002, "@source": "node1085393", "@target": "node1085395"}}, "node1085395": {"edge1085396": {"@length": 0.12686000000000003, "@source": "node1085395", "@target": "node1085396"}, "edge1085397": {"@length": 0.008446999999999982, "@source": "node1085395", "@target": "node1085397"}}, "node1085397": {"edge1085398": {"@length": 0.06751400000000002, "@source": "node1085397", "@target": "node1085398"}, "edge1085399": {"@length": 0.060116, "@source": "node1085397", "@target": "node1085399"}}, "node1085399": {"edge1085400": {"@length": 0.042437, "@source": "node1085399", "@target": "node1085400"}, "edge1085401": {"@length": 0.05472499999999997, "@source": "node1085399", "@target": "node1085401"}}}, "nodeById": {"node1085342": {"@root": true}, "node1085343": {}, "node1085344": {"@otu": "otu405149"}, "node1085345": {}, "node1085346": {}, "node1085347": {}, "node1085348": {"@otu": "otu405151"}, "node1085349": {"@otu": "otu405152"}, "node1085350": {}, "node1085351": {}, "node1085352": {"@otu": "otu405153"}, "node1085353": {"@otu": "otu405154"}, "node1085354": {}, "node1085355": {}, "node1085356": {"@otu": "otu405155"}, "node1085357": {"@otu": "otu405156"}, "node1085358": {}, "node1085359": {"@otu": "otu405157"}, "node1085360": {}, "node1085361": {}, "node1085362": {"@otu": "otu405158"}, "node1085363": {}, "node1085364": {}, "node1085365": {"@otu": "otu405159"}, "node1085366": {}, "node1085367": {}, "node1085368": {}, "node1085369": {"@otu": "otu405160"}, "node1085370": {"@otu": "otu405161"}, "node1085371": {"@otu": "otu405162"}, "node1085372": {}, "node1085373": {"@otu": "otu405163"}, "node1085374": {"@otu": "otu405164"}, "node1085375": {}, "node1085376": {}, "node1085377": {"@otu": "otu405165"}, "node1085378": {"@otu": "otu405166"}, "node1085379": {}, "node1085380": {}, "node1085381": {"@otu": "otu405167"}, "node1085382": {"@otu": "otu405168"}, "node1085383": {}, "node1085384": {}, "node1085385": {"@otu": "otu405169"}, "node1085386": {}, "node1085387": {"@otu": "otu405170"}, "node1085388": {"@otu": "otu405171"}, "node1085389": {}, "node1085390": {"@otu": "otu405172"}, "node1085391": {"@otu": "otu405173"}, "node1085392": {"@otu": "otu405174"}, "node1085393": {}, "node1085394": {"@otu": "otu405148"}, "node1085395": {}, "node1085396": {"@otu": "otu405147"}, "node1085397": {}, "node1085398": {"@otu": "otu405144"}, "node1085399": {}, "node1085400": {"@otu": "otu405145"}, "node1085401": {"@otu": "otu405146"}, "node1085402": {"@otu": "otu405150"}}}}}}}}, "branch2sha": {"master": "2aa180baef3c5e313da1e7f09c83ce2c0467b457"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "655e2a0acda39392c87fb0e3261ddbe0e781f1b4", "author_name": "Jonathan A Rees", "author_email": "jar398@mumble.net", "date": "Wed, 17 Sep 2014 20:02:40 +0000", "date_ISO_8601": "2014-09-17 20:02:40 +0000", "relative_date": "12 years ago", "message_subject": "Looked up DOI", "message_body": "(Update Study #pg_2701 via OpenTree API)"}, {"id": "124c7a2dfdff8676e7b77314f1b3fdebc4fd8a00", "author_name": "Stephen Smith", "author_email": "blackrim@gmail.com", "date": "Thu, 3 Jul 2014 20:37:37 +0100", "date_ISO_8601": "2014-07-03 20:37:37 +0100", "relative_date": "12 years ago", "message_subject": "fixed Melampsora", "message_body": "This was mapped to SAR. Unmapped.\n\n(Update Study #pg_2701 via OpenTree API)"}, {"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "f8a738aeda20a73750847484e110a85c7a3e0a12", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 10 Jun 2014 23:36:42 -0500", "date_ISO_8601": "2014-06-10 23:36:42 -0500", "relative_date": "12 years ago", "message_subject": "Migrating info from gcmdr to nexsons", "message_body": "using peyotl d69c8b180fce7703c7203a0b51712eab57e2988c\ndev/decorate_pg_studies_with_gcmdr_info.py\nto set:\n  ^ot:candidateTreeForSynthesis\n  ^ot:specifiedRoot, and\n  ^ot:unrootedTree\nproperties based on the use of the trees for synthesis study\nlists in gcmdr commit 35bf307e72bed4f59724762dde4a12965abcea92"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}