{"sha": "9f142662c80384add868f25e83f5aa64c86e050f", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}]}, "^ot:annotationEvents": {"annotation": [{"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": ["otu406589", "otu406610", "otu406611", "otu406636"], "@otusID": "otus2710", "@otuID": ["otu406589", "otu406610", "otu406611", "otu406636"]}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu406589", "otu406610", "otu406611", "otu406636"], "refersTo": {"@top": "otus", "@idref": "otus2710", "@otusID": "otus2710"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:dataDeposit"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree6291"], "^ot:curatorName": "Joseph Brown", "^ot:focalClade": 691846, "^ot:focalCladeOTTTaxonName": "Metazoa", "^ot:messages": {"message": []}, "^ot:otusElementOrder": ["otus2710"], "^ot:studyId": "pg_2710", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1126/science.1242592"}, "^ot:studyPublicationReference": "Ryan, J. F., K. Pang, C. E. Schnitzler, A.-D. Nguyen, R. T. Moreland, D. K. Simmons, B. J. Koch, W. R. Francis, P. Havlak, S. A. Smith, N. H. Putnam, S. H. D. Haddock, C. W. Dunn, T. G. Wolfsberg, J. C. Mullikin, M. Q. Martindale, A. D. Baxevanis. 2013. The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution. Science 342 (6164): 1242592-1242592.", "^ot:studyYear": 2013, "^ot:tag": ["ingroup added;"], "^ot:treesElementOrder": ["trees2710"], "otusById": {"otus2710": {"otuById": {"otu406575": {"^ot:originalLabel": "Spizellomyces punctatus", "^ot:ottId": 708156, "^ot:ottTaxonName": "Spizellomyces punctatus"}, "otu406576": {"^ot:originalLabel": "Batrachochytrium dendrobatidis", "^ot:ottId": 858873, "^ot:ottTaxonName": "Batrachochytrium dendrobatidis"}, "otu406577": {"^ot:originalLabel": "Cryptococcus neoformans", "^ot:ottId": 634633, "^ot:ottTaxonName": "Cryptococcus neoformans"}, "otu406578": {"^ot:originalLabel": "Saccharomyces cerevisiae", "^ot:ottId": 908549, "^ot:ottTaxonName": "Saccharomyces cerevisiae"}, "otu406579": {"^ot:originalLabel": "Phycomyces blakesleeanus", "^ot:ottId": 735973, "^ot:ottTaxonName": "Phycomyces blakesleeanus"}, "otu406580": {"^ot:originalLabel": "Rhizopus orizae", "^ot:ottId": 530834, "^ot:ottTaxonName": "Rhizopus liquefaciens"}, "otu406581": {"^ot:originalLabel": "Amoebidium parasiticum", "^ot:ottId": 463509, "^ot:ottTaxonName": "Amoebidium parasiticum"}, "otu406582": {"^ot:originalLabel": "Sphaeroforma arctica", "^ot:ottId": 380182, "^ot:ottTaxonName": "Sphaeroforma arctica"}, "otu406583": {"^ot:originalLabel": "Capsaspora owczarzaki ATCC 30864", "^ot:ottId": 375259, "^ot:ottTaxonName": "Capsaspora owczarzaki ATCC 30864"}, "otu406584": {"^ot:originalLabel": "Monosiga ovata", "^ot:ottId": 309875, "^ot:ottTaxonName": "Monosiga ovata"}, "otu406585": {"^ot:originalLabel": "Salpingoeca rosetta", "^ot:ottId": 1002450, "^ot:ottTaxonName": "Salpingoeca sp. ATCC 50818"}, "otu406586": {"^ot:originalLabel": "Monosiga brevicollis", "^ot:ottId": 281703, "^ot:ottTaxonName": "Monosiga brevicollis"}, "otu406587": {"^ot:originalLabel": "Pleurobrachia pileus", "^ot:ottId": 626459, "^ot:ottTaxonName": "Pleurobrachia pileus"}, "otu406588": {"^ot:originalLabel": "Mnemiopsis", "^ot:ottId": 161882, "^ot:ottTaxonName": "Mnemiopsis"}, "otu406589": {"^ot:originalLabel": "Mertensiid sp"}, "otu406590": {"^ot:originalLabel": "Leucetta chagosensis", "^ot:ottId": 918964, "^ot:ottTaxonName": "Leucetta chagosensis"}, "otu406591": {"^ot:originalLabel": "Sycon raphanus", "^ot:ottId": 505344, "^ot:ottTaxonName": "Sycon raphanus"}, "otu406592": {"^ot:originalLabel": "Oscarella carmela", "^ot:ottId": 862117, "^ot:ottTaxonName": "Oscarella carmela"}, "otu406593": {"^ot:originalLabel": "Oscarella lobularis", "^ot:ottId": 7587, "^ot:ottTaxonName": "Oscarella lobularis"}, "otu406594": {"^ot:originalLabel": "Oopsacas minuta", "^ot:ottId": 351698, "^ot:ottTaxonName": "Oopsacas minuta"}, "otu406595": {"^ot:originalLabel": "Carteriospongia foliascens", "^ot:ottId": 472969, "^ot:ottTaxonName": "Carteriospongia foliascens"}, "otu406596": {"^ot:originalLabel": "Amphimedon queenslandica", "^ot:ottId": 707499, "^ot:ottTaxonName": "Amphimedon queenslandica"}, "otu406597": {"^ot:originalLabel": "Suberites domuncula", "^ot:ottId": 127353, "^ot:ottTaxonName": "Suberites domuncula"}, "otu406598": {"^ot:originalLabel": "Lubomirskia baicalensis", "^ot:ottId": 74677, "^ot:ottTaxonName": "Lubomirskia baicalensis"}, "otu406599": {"^ot:originalLabel": "Ephydatia muelleri", "^ot:ottId": 588770, "^ot:ottTaxonName": "Ephydatia muelleri"}, "otu406600": {"^ot:originalLabel": "Trichoplax adhaerens", "^ot:ottId": 570365, "^ot:ottTaxonName": "Trichoplax adhaerens"}, "otu406601": {"^ot:originalLabel": "Cyanea capillata", "^ot:ottId": 178412, "^ot:ottTaxonName": "Cyanea capillata"}, "otu406602": {"^ot:originalLabel": "Clytia hemisphaerica", "^ot:ottId": 33386, "^ot:ottTaxonName": "Clytia hemisphaerica"}, "otu406603": {"^ot:originalLabel": "Hydra magnipapillata", "^ot:ottId": 861536, "^ot:ottTaxonName": "Hydra vulgaris"}, "otu406604": {"^ot:originalLabel": "Podocoryna carnea", "^ot:ottId": 612106, "^ot:ottTaxonName": "Podocoryna carnea"}, "otu406605": {"^ot:originalLabel": "Hydractinia echinata", "^ot:ottId": 115617, "^ot:ottTaxonName": "Hydractinia echinata"}, "otu406606": {"^ot:originalLabel": "Nematostella vectensis", "^ot:ottId": 938118, "^ot:ottTaxonName": "Nematostella vectensis"}, "otu406607": {"^ot:originalLabel": "Anemonia viridis", "^ot:ottId": 214124, "^ot:ottTaxonName": "Anemonia viridis"}, "otu406608": {"^ot:originalLabel": "Aiptasia pallida", "^ot:ottId": 135923, "^ot:ottTaxonName": "Aiptasia pallida"}, "otu406609": {"^ot:originalLabel": "Metridium senile", "^ot:ottId": 558017, "^ot:ottTaxonName": "Metridium senile"}, "otu406610": {"^ot:originalLabel": "Acropora palmata"}, "otu406611": {"^ot:originalLabel": "Acropora millepora"}, "otu406612": {"^ot:originalLabel": "Porites astreoides", "^ot:ottId": 208979, "^ot:ottTaxonName": "Porites astreoides"}, "otu406613": {"^ot:originalLabel": "Montastraea faveolata", "^ot:ottId": 955287, "^ot:ottTaxonName": "Montastraea faveolata"}, "otu406614": {"^ot:originalLabel": "Xenoturbella bocki", "^ot:ottId": 467516, "^ot:ottTaxonName": "Xenoturbella bocki"}, "otu406615": {"^ot:originalLabel": "Nemertoderma westbladi", "^ot:ottId": 189324, "^ot:ottTaxonName": "Nemertoderma westbladi"}, "otu406616": {"^ot:originalLabel": "Meara stichopi", "^ot:ottId": 696822, "^ot:ottTaxonName": "Meara stichopi"}, "otu406617": {"^ot:originalLabel": "Isodiametra pulchra", "^ot:ottId": 431879, "^ot:ottTaxonName": "Isodiametra pulchra"}, "otu406618": {"^ot:originalLabel": "Symsagittifera roscoffensis", "^ot:ottId": 675113, "^ot:ottTaxonName": "Symsagittifera roscoffensis"}, "otu406619": {"^ot:originalLabel": "Convolutriloba longifissura", "^ot:ottId": 892905, "^ot:ottTaxonName": "Convolutriloba longifissura"}, "otu406620": {"^ot:originalLabel": "Saccoglossus kowalevskii", "^ot:ottId": 570370, "^ot:ottTaxonName": "Saccoglossus kowalevskii"}, "otu406621": {"^ot:originalLabel": "Ptychodera flava", "^ot:ottId": 768590, "^ot:ottTaxonName": "Ptychodera flava"}, "otu406622": {"^ot:originalLabel": "Strongylocentrotus purpuratus", "^ot:ottId": 564702, "^ot:ottTaxonName": "Strongylocentrotus purpuratus"}, "otu406623": {"^ot:originalLabel": "Asterina pectinifera", "^ot:ottId": 977093, "^ot:ottTaxonName": "Patiria pectinifera"}, "otu406624": {"^ot:originalLabel": "Branchiostoma floridae", "^ot:ottId": 176532, "^ot:ottTaxonName": "Branchiostoma floridae"}, "otu406625": {"^ot:originalLabel": "Petromyzon marinus", "^ot:ottId": 227494, "^ot:ottTaxonName": "Petromyzon marinus"}, "otu406626": {"^ot:originalLabel": "Gallus", "^ot:ottId": 153562, "^ot:ottTaxonName": "Gallus"}, "otu406627": {"^ot:originalLabel": "Ciona intestinalis", "^ot:ottId": 744224, "^ot:ottTaxonName": "Ciona intestinalis"}, "otu406628": {"^ot:originalLabel": "Halocynthia roretzi", "^ot:ottId": 672826, "^ot:ottTaxonName": "Halocynthia roretzi"}, "otu406629": {"^ot:originalLabel": "Echinoderes horni", "^ot:ottId": 1046342, "^ot:ottTaxonName": "Echinoderes horni"}, "otu406630": {"^ot:originalLabel": "Xiphinema index", "^ot:ottId": 165364, "^ot:ottTaxonName": "Xiphinema index"}, "otu406631": {"^ot:originalLabel": "Euperipatoides kanangrensis", "^ot:ottId": 1046340, "^ot:ottTaxonName": "Euperipatoides kanangrensis"}, "otu406632": {"^ot:originalLabel": "Anoplodactylus eroticus", "^ot:ottId": 1046338, "^ot:ottTaxonName": "Anoplodactylus eroticus"}, "otu406633": {"^ot:originalLabel": "Boophilus microplus", "^ot:ottId": 621053, "^ot:ottTaxonName": "Rhipicephalus microplus"}, "otu406634": {"^ot:originalLabel": "Daphnia pulex", "^ot:ottId": 59086, "^ot:ottTaxonName": "Daphnia pulex"}, "otu406635": {"^ot:originalLabel": "Drosophila melanogaster", "^ot:ottId": 505714, "^ot:ottTaxonName": "Drosophila melanogaster"}, "otu406636": {"^ot:originalLabel": "Schmidtea mediterranea"}, "otu406637": {"^ot:originalLabel": "Paraplanocera oligoglena", "^ot:ottId": 5132049, "^ot:ottTaxonName": "Paraplanocera oligoglena"}, "otu406638": {"^ot:originalLabel": "Capitella telata", "^ot:ottId": 707082, "^ot:ottTaxonName": "Capitella teleta"}, "otu406639": {"^ot:originalLabel": "Helobdella robusta", "^ot:ottId": 870792, "^ot:ottTaxonName": "Helobdella robusta"}, "otu406640": {"^ot:originalLabel": "Cerebratulus lacteus", "^ot:ottId": 971433, "^ot:ottTaxonName": "Cerebratulus lacteus"}, "otu406641": {"^ot:originalLabel": "Terebratalia transversa", "^ot:ottId": 463351, "^ot:ottTaxonName": "Terebratalia transversa"}, "otu406642": {"^ot:originalLabel": "Euprymna scolopes", "^ot:ottId": 528814, "^ot:ottTaxonName": "Euprymna scolopes"}, "otu406643": {"^ot:originalLabel": "Lottia gigantea", "^ot:ottId": 840650, "^ot:ottTaxonName": "Lottia gigantea"}, "otu406644": {"^ot:originalLabel": "Crassostrea virginica", "^ot:ottId": 365708, "^ot:ottTaxonName": "Crassostrea virginica"}}}}, "treesById": {"trees2710": {"@otus": "otus2710", "^ot:treeElementOrder": ["tree6291"], "treeById": {"tree6291": {"@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:substitutionCount", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "ML bootstrap, EST (Figure 3)", "^ot:inGroupClade": "node1093975", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node1093951", "^ot:specifiedRoot": "node1093951", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1093951": {"edge1093952": {"@length": 0.16460900747636553, "@source": "node1093951", "@target": "node1093952"}, "edge1093963": {"@length": 0.08230450373818271, "@source": "node1093951", "@target": "node1093963"}}, "node1093952": {"edge1093953": {"@length": 0.12299435590192698, "@source": "node1093952", "@target": "node1093953"}, "edge1093956": {"@length": 0.0650819141488641, "@source": "node1093952", "@target": "node1093956"}}, "node1093953": {"edge1093954": {"@length": 0.2024970031026746, "@source": "node1093953", "@target": "node1093954"}, "edge1093955": {"@length": 0.3085262011753128, "@source": "node1093953", "@target": "node1093955"}}, "node1093956": {"edge1093957": {"@length": 0.12152005271578381, "@source": "node1093956", "@target": "node1093957"}, "edge1093960": {"@length": 0.17680467977377812, "@source": "node1093956", "@target": "node1093960"}}, "node1093957": {"edge1093958": {"@length": 0.5203479417388146, "@source": "node1093957", "@target": "node1093958"}, "edge1093959": {"@length": 0.7984354110520482, "@source": "node1093957", "@target": "node1093959"}}, "node1093960": {"edge1093961": {"@length": 0.13393763581740825, "@source": "node1093960", "@target": "node1093961"}, "edge1093962": {"@length": 0.15320049557778037, "@source": "node1093960", "@target": "node1093962"}}, "node1093963": {"edge1093964": {"@length": 0.15378742298180093, "@source": "node1093963", "@target": "node1093964"}, "edge1093967": {"@length": 0.03281137032285253, "@source": "node1093963", "@target": "node1093967"}}, "node1093964": {"edge1093965": {"@length": 0.2744689062794362, "@source": "node1093964", "@target": "node1093965"}, "edge1093966": {"@length": 0.3603135233614826, "@source": "node1093964", "@target": "node1093966"}}, "node1093967": {"edge1093968": {"@length": 0.43017774096640005, "@source": "node1093967", "@target": "node1093968"}, "edge1093969": {"@length": 0.061621303967139385, "@source": "node1093967", "@target": "node1093969"}}, "node1093969": {"edge1093970": {"@length": 0.1283324081375221, "@source": "node1093969", "@target": "node1093970"}, "edge1093975": {"@length": 0.0822496321269, "@source": "node1093969", "@target": "node1093975"}}, "node1093970": {"edge1093971": {"@length": 0.4037917348573391, "@source": "node1093970", "@target": "node1093971"}, "edge1093972": {"@length": 0.1431547701041327, "@source": "node1093970", "@target": "node1093972"}}, "node1093972": {"edge1093973": {"@length": 0.38326498470884207, "@source": "node1093972", "@target": "node1093973"}, "edge1093974": {"@length": 0.37786862170238544, "@source": "node1093972", "@target": "node1093974"}}, "node1093975": {"edge1093976": {"@length": 0.402299562121774, "@source": "node1093975", "@target": "node1093976"}, "edge1093981": {"@length": 0.034397852695174036, "@source": "node1093975", "@target": "node1093981"}}, "node1093976": {"edge1093977": {"@length": 0.1306238751032881, "@source": "node1093976", "@target": "node1093977"}, "edge1093978": {"@length": 0.03673397519755717, "@source": "node1093976", "@target": "node1093978"}}, "node1093978": {"edge1093979": {"@length": 0.07759175570714116, "@source": "node1093978", "@target": "node1093979"}, "edge1093980": {"@length": 0.08037969492365404, "@source": "node1093978", "@target": "node1093980"}}, "node1093981": {"edge1093982": {"@length": 0.029869334493591637, "@source": "node1093981", "@target": "node1093982"}, "edge1094001": {"@length": 0.022101778228274638, "@source": "node1093981", "@target": "node1094001"}}, "node1093982": {"edge1093983": {"@length": 0.04479900546924531, "@source": "node1093982", "@target": "node1093983"}, "edge1093990": {"@length": 0.046032028068671016, "@source": "node1093982", "@target": "node1093990"}}, "node1093983": {"edge1093984": {"@length": 0.10645626625158555, "@source": "node1093983", "@target": "node1093984"}, "edge1093987": {"@length": 0.19922511579148816, "@source": "node1093983", "@target": "node1093987"}}, "node1093984": {"edge1093985": {"@length": 0.23617228142172175, "@source": "node1093984", "@target": "node1093985"}, "edge1093986": {"@length": 0.27259014487939726, "@source": "node1093984", "@target": "node1093986"}}, "node1093987": {"edge1093988": {"@length": 0.13020037524531403, "@source": "node1093987", "@target": "node1093988"}, "edge1093989": {"@length": 0.10823080542797081, "@source": "node1093987", "@target": "node1093989"}}, "node1093990": {"edge1093991": {"@length": 0.5389648260774753, "@source": "node1093990", "@target": "node1093991"}, "edge1093992": {"@length": 0.02993981392290701, "@source": "node1093990", "@target": "node1093992"}}, "node1093992": {"edge1093993": {"@length": 0.3404857648239128, "@source": "node1093992", "@target": "node1093993"}, "edge1093994": {"@length": 0.05356555383612549, "@source": "node1093992", "@target": "node1093994"}}, "node1093994": {"edge1093995": {"@length": 0.2717035233554176, "@source": "node1093994", "@target": "node1093995"}, "edge1093996": {"@length": 0.03808612423661839, "@source": "node1093994", "@target": "node1093996"}}, "node1093996": {"edge1093997": {"@length": 0.20026681107504007, "@source": "node1093996", "@target": "node1093997"}, "edge1093998": {"@length": 0.19440432015825237, "@source": "node1093996", "@target": "node1093998"}}, "node1093998": {"edge1093999": {"@length": 0.05214521708670816, "@source": "node1093998", "@target": "node1093999"}, "edge1094000": {"@length": 0.019141405748568374, "@source": "node1093998", "@target": "node1094000"}}, "node1094001": {"edge1094002": {"@length": 0.36331717875468494, "@source": "node1094001", "@target": "node1094002"}, "edge1094003": {"@length": 0.026358611550522104, "@source": "node1094001", "@target": "node1094003"}}, "node1094003": {"edge1094004": {"@length": 0.04101292377069421, "@source": "node1094003", "@target": "node1094004"}, "edge1094029": {"@length": 0.043696051407566605, "@source": "node1094003", "@target": "node1094029"}}, "node1094004": {"edge1094005": {"@length": 0.09276458228674889, "@source": "node1094004", "@target": "node1094005"}, "edge1094014": {"@length": 0.07970405520139856, "@source": "node1094004", "@target": "node1094014"}}, "node1094005": {"edge1094006": {"@length": 0.220843156620823, "@source": "node1094005", "@target": "node1094006"}, "edge1094007": {"@length": 0.07470906575505287, "@source": "node1094005", "@target": "node1094007"}}, "node1094007": {"edge1094008": {"@length": 0.21749237236097985, "@source": "node1094007", "@target": "node1094008"}, "edge1094009": {"@length": 0.02994331955504692, "@source": "node1094007", "@target": "node1094009"}}, "node1094009": {"edge1094010": {"@length": 0.17740187093020376, "@source": "node1094009", "@target": "node1094010"}, "edge1094011": {"@length": 0.07455086617777851, "@source": "node1094009", "@target": "node1094011"}}, "node1094011": {"edge1094012": {"@length": 0.07231434063151376, "@source": "node1094011", "@target": "node1094012"}, "edge1094013": {"@length": 0.08494408536315579, "@source": "node1094011", "@target": "node1094013"}}, "node1094014": {"edge1094015": {"@length": 0.05012979235545778, "@source": "node1094014", "@target": "node1094015"}, "edge1094022": {"@length": 0.07227961792874682, "@source": "node1094014", "@target": "node1094022"}}, "node1094015": {"edge1094016": {"@length": 0.10746263246970633, "@source": "node1094015", "@target": "node1094016"}, "edge1094017": {"@length": 0.04091925347876346, "@source": "node1094015", "@target": "node1094017"}}, "node1094017": {"edge1094018": {"@length": 0.09929724680570118, "@source": "node1094017", "@target": "node1094018"}, "edge1094019": {"@length": 0.01841836283966991, "@source": "node1094017", "@target": "node1094019"}}, "node1094019": {"edge1094020": {"@length": 0.18047781635570626, "@source": "node1094019", "@target": "node1094020"}, "edge1094021": {"@length": 0.07733865304769716, "@source": "node1094019", "@target": "node1094021"}}, "node1094022": {"edge1094023": {"@length": 0.07294455961488588, "@source": "node1094022", "@target": "node1094023"}, "edge1094026": {"@length": 0.02150492320756836, "@source": "node1094022", "@target": "node1094026"}}, "node1094023": {"edge1094024": {"@length": 0.04163370263138244, "@source": "node1094023", "@target": "node1094024"}, "edge1094025": {"@length": 0.026940730989953643, "@source": "node1094023", "@target": "node1094025"}}, "node1094026": {"edge1094027": {"@length": 0.07433790682835273, "@source": "node1094026", "@target": "node1094027"}, "edge1094028": {"@length": 0.09336211492260116, "@source": "node1094026", "@target": "node1094028"}}, "node1094029": {"edge1094030": {"@length": 0.039263710145951425, "@source": "node1094029", "@target": "node1094030"}, "edge1094041": {"@length": 0.018745239580219897, "@source": "node1094029", "@target": "node1094041"}}, "node1094030": {"edge1094031": {"@length": 0.27292769177328013, "@source": "node1094030", "@target": "node1094031"}, "edge1094032": {"@length": 0.04111572142512454, "@source": "node1094030", "@target": "node1094032"}}, "node1094032": {"edge1094033": {"@length": 0.08217516046639739, "@source": "node1094032", "@target": "node1094033"}, "edge1094036": {"@length": 0.25833689410393657, "@source": "node1094032", "@target": "node1094036"}}, "node1094033": {"edge1094034": {"@length": 0.317648398827851, "@source": "node1094033", "@target": "node1094034"}, "edge1094035": {"@length": 0.41613352146291116, "@source": "node1094033", "@target": "node1094035"}}, "node1094036": {"edge1094037": {"@length": 0.3170330293157957, "@source": "node1094036", "@target": "node1094037"}, "edge1094038": {"@length": 0.16886975796358894, "@source": "node1094036", "@target": "node1094038"}}, "node1094038": {"edge1094039": {"@length": 0.12901861920683322, "@source": "node1094038", "@target": "node1094039"}, "edge1094040": {"@length": 0.14757009333935933, "@source": "node1094038", "@target": "node1094040"}}, "node1094041": {"edge1094042": {"@length": 0.017928338326267168, "@source": "node1094041", "@target": "node1094042"}, "edge1094059": {"@length": 0.0334890309496807, "@source": "node1094041", "@target": "node1094059"}}, "node1094042": {"edge1094043": {"@length": 0.0459210843931106, "@source": "node1094042", "@target": "node1094043"}, "edge1094050": {"@length": 0.020925042284273943, "@source": "node1094042", "@target": "node1094050"}}, "node1094043": {"edge1094044": {"@length": 0.06568306788619394, "@source": "node1094043", "@target": "node1094044"}, "edge1094047": {"@length": 0.06816799708925636, "@source": "node1094043", "@target": "node1094047"}}, "node1094044": {"edge1094045": {"@length": 0.11173809327878814, "@source": "node1094044", "@target": "node1094045"}, "edge1094046": {"@length": 0.0945079391972139, "@source": "node1094044", "@target": "node1094046"}}, "node1094047": {"edge1094048": {"@length": 0.1798980853076556, "@source": "node1094047", "@target": "node1094048"}, "edge1094049": {"@length": 0.16386505742344537, "@source": "node1094047", "@target": "node1094049"}}, "node1094050": {"edge1094051": {"@length": 0.22465754938640292, "@source": "node1094050", "@target": "node1094051"}, "edge1094052": {"@length": 0.02295402532200508, "@source": "node1094050", "@target": "node1094052"}}, "node1094052": {"edge1094053": {"@length": 0.08628261879015953, "@source": "node1094052", "@target": "node1094053"}, "edge1094056": {"@length": 0.16096761331776777, "@source": "node1094052", "@target": "node1094056"}}, "node1094053": {"edge1094054": {"@length": 0.2008030279004318, "@source": "node1094053", "@target": "node1094054"}, "edge1094055": {"@length": 0.12105360510539276, "@source": "node1094053", "@target": "node1094055"}}, "node1094056": {"edge1094057": {"@length": 0.21277234321385796, "@source": "node1094056", "@target": "node1094057"}, "edge1094058": {"@length": 0.21642105889112317, "@source": "node1094056", "@target": "node1094058"}}, "node1094059": {"edge1094060": {"@length": 0.02943259002400178, "@source": "node1094059", "@target": "node1094060"}, "edge1094073": {"@length": 0.023829685292118263, "@source": "node1094059", "@target": "node1094073"}}, "node1094060": {"edge1094061": {"@length": 0.03692057616548361, "@source": "node1094060", "@target": "node1094061"}, "edge1094064": {"@length": 0.017429689274800042, "@source": "node1094060", "@target": "node1094064"}}, "node1094061": {"edge1094062": {"@length": 0.295608474129722, "@source": "node1094061", "@target": "node1094062"}, "edge1094063": {"@length": 0.42029877870589516, "@source": "node1094061", "@target": "node1094063"}}, "node1094064": {"edge1094065": {"@length": 0.19763899110833605, "@source": "node1094064", "@target": "node1094065"}, "edge1094066": {"@length": 0.0206291131500691, "@source": "node1094064", "@target": "node1094066"}}, "node1094066": {"edge1094067": {"@length": 0.028296817993298307, "@source": "node1094066", "@target": "node1094067"}, "edge1094070": {"@length": 0.05267399854623833, "@source": "node1094066", "@target": "node1094070"}}, "node1094067": {"edge1094068": {"@length": 0.1959596341828712, "@source": "node1094067", "@target": "node1094068"}, "edge1094069": {"@length": 0.2437535734733105, "@source": "node1094067", "@target": "node1094069"}}, "node1094070": {"edge1094071": {"@length": 0.23972870181742567, "@source": "node1094070", "@target": "node1094071"}, "edge1094072": {"@length": 0.33885145206719924, "@source": "node1094070", "@target": "node1094072"}}, "node1094073": {"edge1094074": {"@length": 0.1674593717735129, "@source": "node1094073", "@target": "node1094074"}, "edge1094077": {"@length": 0.017349883729989024, "@source": "node1094073", "@target": "node1094077"}}, "node1094074": {"edge1094075": {"@length": 0.5157853299022654, "@source": "node1094074", "@target": "node1094075"}, "edge1094076": {"@length": 0.29796434177792896, "@source": "node1094074", "@target": "node1094076"}}, "node1094077": {"edge1094078": {"@length": 0.04471949068974501, "@source": "node1094077", "@target": "node1094078"}, "edge1094081": {"@length": 0.012779191615236662, "@source": "node1094077", "@target": "node1094081"}}, "node1094078": {"edge1094079": {"@length": 0.20160703196437235, "@source": "node1094078", "@target": "node1094079"}, "edge1094080": {"@length": 0.3123960168911811, "@source": "node1094078", "@target": "node1094080"}}, "node1094081": {"edge1094082": {"@length": 0.02471420432217908, "@source": "node1094081", "@target": "node1094082"}, "edge1094085": {"@length": 0.025139117596878924, "@source": "node1094081", "@target": "node1094085"}}, "node1094082": {"edge1094083": {"@length": 0.1815410628718338, "@source": "node1094082", "@target": "node1094083"}, "edge1094084": {"@length": 0.18028995930199088, "@source": "node1094082", "@target": "node1094084"}}, "node1094085": {"edge1094086": {"@length": 0.254551349390705, "@source": "node1094085", "@target": "node1094086"}, "edge1094087": {"@length": 0.02386322358558801, "@source": "node1094085", "@target": "node1094087"}}, "node1094087": {"edge1094088": {"@length": 0.1869524597625648, "@source": "node1094087", "@target": "node1094088"}, "edge1094089": {"@length": 0.20307863680103422, "@source": "node1094087", "@target": "node1094089"}}}, "nodeById": {"node1093951": {"@root": true}, "node1093952": {}, "node1093953": {}, "node1093954": {"@otu": "otu406575"}, "node1093955": {"@otu": "otu406576"}, "node1093956": {}, "node1093957": {}, "node1093958": {"@otu": "otu406577"}, "node1093959": {"@otu": "otu406578"}, "node1093960": {}, "node1093961": {"@otu": "otu406579"}, "node1093962": {"@otu": "otu406580"}, "node1093963": {}, "node1093964": {}, "node1093965": {"@otu": "otu406581"}, "node1093966": {"@otu": "otu406582"}, "node1093967": {}, "node1093968": {"@otu": "otu406583"}, "node1093969": {}, "node1093970": {}, "node1093971": {"@otu": "otu406584"}, "node1093972": {}, "node1093973": {"@otu": "otu406585"}, "node1093974": {"@otu": "otu406586"}, "node1093975": {}, "node1093976": {}, "node1093977": {"@otu": "otu406587"}, "node1093978": {}, "node1093979": {"@otu": "otu406588"}, "node1093980": {"@otu": "otu406589"}, "node1093981": {}, "node1093982": {}, "node1093983": {}, "node1093984": {}, "node1093985": {"@otu": "otu406590"}, "node1093986": {"@otu": "otu406591"}, "node1093987": {}, "node1093988": {"@otu": "otu406592"}, "node1093989": {"@otu": "otu406593"}, "node1093990": {}, "node1093991": {"@otu": "otu406594"}, "node1093992": {}, "node1093993": {"@otu": "otu406595"}, "node1093994": {}, "node1093995": {"@otu": "otu406596"}, "node1093996": {}, "node1093997": {"@otu": "otu406597"}, "node1093998": {}, "node1093999": {"@otu": "otu406598"}, "node1094000": {"@otu": "otu406599"}, "node1094001": {}, "node1094002": {"@otu": "otu406600"}, "node1094003": {}, "node1094004": {}, "node1094005": {}, "node1094006": {"@otu": "otu406601"}, "node1094007": {}, "node1094008": {"@otu": "otu406602"}, "node1094009": {}, "node1094010": {"@otu": "otu406603"}, "node1094011": {}, "node1094012": {"@otu": "otu406604"}, "node1094013": {"@otu": "otu406605"}, "node1094014": {}, "node1094015": {}, "node1094016": {"@otu": "otu406606"}, "node1094017": {}, "node1094018": {"@otu": "otu406607"}, "node1094019": {}, "node1094020": {"@otu": "otu406608"}, "node1094021": {"@otu": "otu406609"}, "node1094022": {}, "node1094023": {}, "node1094024": {"@otu": "otu406610"}, "node1094025": {"@otu": "otu406611"}, "node1094026": {}, "node1094027": {"@otu": "otu406612"}, "node1094028": {"@otu": "otu406613"}, "node1094029": {}, "node1094030": {}, "node1094031": {"@otu": "otu406614"}, "node1094032": {}, "node1094033": {}, "node1094034": {"@otu": "otu406615"}, "node1094035": {"@otu": "otu406616"}, "node1094036": {}, "node1094037": {"@otu": "otu406617"}, "node1094038": {}, "node1094039": {"@otu": "otu406618"}, "node1094040": {"@otu": "otu406619"}, "node1094041": {}, "node1094042": {}, "node1094043": {}, "node1094044": {}, "node1094045": {"@otu": "otu406620"}, "node1094046": {"@otu": "otu406621"}, "node1094047": {}, "node1094048": {"@otu": "otu406622"}, "node1094049": {"@otu": "otu406623"}, "node1094050": {}, "node1094051": {"@otu": "otu406624"}, "node1094052": {}, "node1094053": {}, "node1094054": {"@otu": "otu406625"}, "node1094055": {"@otu": "otu406626"}, "node1094056": {}, "node1094057": {"@otu": "otu406627"}, "node1094058": {"@otu": "otu406628"}, "node1094059": {}, "node1094060": {}, "node1094061": {}, "node1094062": {"@otu": "otu406629"}, "node1094063": {"@otu": "otu406630"}, "node1094064": {}, "node1094065": {"@otu": "otu406631"}, "node1094066": {}, "node1094067": {}, "node1094068": {"@otu": "otu406632"}, "node1094069": {"@otu": "otu406633"}, "node1094070": {}, "node1094071": {"@otu": "otu406634"}, "node1094072": {"@otu": "otu406635"}, "node1094073": {}, "node1094074": {}, "node1094075": {"@otu": "otu406636"}, "node1094076": {"@otu": "otu406637"}, "node1094077": {}, "node1094078": {}, "node1094079": {"@otu": "otu406638"}, "node1094080": {"@otu": "otu406639"}, "node1094081": {}, "node1094082": {}, "node1094083": {"@otu": "otu406640"}, "node1094084": {"@otu": "otu406641"}, "node1094085": {}, "node1094086": {"@otu": "otu406642"}, "node1094087": {}, "node1094088": {"@otu": "otu406643"}, "node1094089": {"@otu": "otu406644"}}}}}}}}, "branch2sha": {"master": "9f142662c80384add868f25e83f5aa64c86e050f"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "f8a738aeda20a73750847484e110a85c7a3e0a12", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 10 Jun 2014 23:36:42 -0500", "date_ISO_8601": "2014-06-10 23:36:42 -0500", "relative_date": "12 years ago", "message_subject": "Migrating info from gcmdr to nexsons", "message_body": "using peyotl d69c8b180fce7703c7203a0b51712eab57e2988c\ndev/decorate_pg_studies_with_gcmdr_info.py\nto set:\n  ^ot:candidateTreeForSynthesis\n  ^ot:specifiedRoot, and\n  ^ot:unrootedTree\nproperties based on the use of the trees for synthesis study\nlists in gcmdr commit 35bf307e72bed4f59724762dde4a12965abcea92"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}