#NEXUS
BEGIN TAXA;
    Dimensions NTax = 44;
    TaxLabels 'Trinema enchelys AJ418792' 'Corythion dubium EF456751' 'Euglypha acanthophora AJ41878' 'Assulina muscorum AJ418791' 'Cyphoderia ampulla GU228896' 'Ovulinata parva strain CCAP1554/1 HQ121432' 'Paulinella chromatophora X81811' 'Eocercomonas sp. AF411269' 'Uncultured eukaryote clone I_4_50 AB534514' 'Cavernomonas mira FJ790718' 'Cercomonas plasmodialis AF411268' 'Cercomonas LargeSA AF411266' 'Pseudopirsonia mucosa AJ5611' 'Auranticordis quadriverberis EU484394' 'Nudifila producta CCAP1911/1 HQ121434' 'Clautriavia biflagellata FJ919772' 'Spongomonas solitaria CCAP 1971/1 HQ121435' 'Thaumatomastix salina UIO286 FR846196' 'Uncultured CCW52 AY180026' 'Reckertia filosa AY268040' 'Uncultured 8-32 FN690392' 'Uncultured 3b-D9 FN690393' 'Uncultured 5-B11 FN690394' 'Uncultured Amb_18S_1434 EF023966' 'Uncultured Elev_18S_7011 EF025032' 'Uncultured Amb_18S_1319 EF023867' 'Allas diplophysa AF411262' 'Thaumatomonas seravini AF411259' 'Thaumatomonas sp. AF411260' 'Thaumatomonas sp. TMT002 DQ980486' 'Thaumatomonas sp. U42446' 'Thaumatomonas sp. SCCAP T1 AY496046' 'Thaumatomonas seravini AY496044' 'Thaumatomonas coloniensis DQ211591' 'Thaumatomonas sp. ATCC50250 AF411261' 'Thaumatomastix sp. GQ144681' 'Gyromitus sp. DQ211593' 'Euglypha rotunda CCAP1520/1 X77692' 'Euglypha rotunda AJ418782' 'Euglypha rotunda AJ418784' 'Uncultured eukaryote clone I 4 50 AB534514' 'Uncultured Amb 18S 1434 EF023966' 'Uncultured Elev 18S 7011 EF025032' 'Uncultured Amb 18S 1319 EF023867' ;
END;
BEGIN TREES;
    Tree tree6479 = ((('Trinema enchelys AJ418792':0.01600872444248091,'Corythion dubium EF456751':0.010518568498464732):0.03759880022938207,('Euglypha acanthophora AJ41878':0.13011220776562668,('Assulina muscorum AJ418791':0.029047924259103974,(('Cyphoderia ampulla GU228896':0.2806714812026795,('Ovulinata parva strain CCAP1554/1 HQ121432':0.08369211413805892,'Paulinella chromatophora X81811':0.07618473622516347):0.09150212232895204):0.03094166605187969,((((('Eocercomonas sp. AF411269':0.004472791577690895,'Uncultured eukaryote clone I_4_50 AB534514':0.030253879513947687):0.10748346530661929,('Cavernomonas mira FJ790718':0.08507967333951907,('Cercomonas plasmodialis AF411268':0.020331320696808867,'Cercomonas LargeSA AF411266':0.025872856496866027):0.03466686760367992):0.009461376745277783):0.05157420789706697,('Pseudopirsonia mucosa AJ5611':0.11367784015417931,'Auranticordis quadriverberis EU484394':0.14560555040385753):0.05843351020064615):0.01485813524043582,('Nudifila producta CCAP1911/1 HQ121434':0.10224489196173574,'Clautriavia biflagellata FJ919772':0.12272212631266215):0.02456250235552393):0.008614173413845549,('Spongomonas solitaria CCAP 1971/1 HQ121435':0.249301721160086,(((('Thaumatomastix salina UIO286 FR846196':0.050297105378819866,'Uncultured CCW52 AY180026':0.06053269932362201):0.021930447867436115,(('Reckertia filosa AY268040':0.020577311623867795,('Uncultured 8-32 FN690392':0.03592389623965862,('Uncultured 3b-D9 FN690393':0.0171368452132335,'Uncultured 5-B11 FN690394':0.003914415678576356):0.0015447827399929627):0.024214890921159724):0.012084235773600573,((('Uncultured Amb_18S_1434 EF023966':1.49200777951391e-06,'Uncultured Elev_18S_7011 EF025032':1.49200777951391e-06):1.49200777951391e-06,'Uncultured Amb_18S_1319 EF023867':0.001707052393291215):0.02183505906213537,(('Allas diplophysa AF411262':0.011979368121099248,('Thaumatomonas seravini AF411259':0.0033943356819051535,('Thaumatomonas sp. AF411260':0.001693156509729016,'Thaumatomonas sp. TMT002 DQ980486':0.0033872188683485593):1.49200777951391e-06):1.49200777951391e-06):0.005168349273996433,((('Thaumatomonas sp. U42446':0.006839130857230179,('Thaumatomonas sp. SCCAP T1 AY496046':1.49200777951391e-06,'Thaumatomonas seravini AY496044':0.005120785617067858):1.49200777951391e-06):0.0016954035746091524,'Thaumatomonas coloniensis DQ211591':1.49200777951391e-06):0.001624499634917385,'Thaumatomonas sp. ATCC50250 AF411261':0.012104236533601872):0.007034462999633056):0.03029993606170986):0.039330783284595605):0.005777974328655369):0.006091638692694374,'Thaumatomastix sp. GQ144681':0.059837430005347275):0.009026145861132479,'Gyromitus sp. DQ211593':0.15346176807963025):0.019274607711582206):0.012989660746673988):0.04965301567996811):0.06047478733200593):0.011810728989683557):0.010128307256049423):0.058494641040385355,('Euglypha rotunda CCAP1520/1 X77692':0.004397971030518145,'Euglypha rotunda AJ418782':0.004266379170234383):0.02157906674116097,'Euglypha rotunda AJ418784':0.01786243078525909);    Tree tree6705 = ((('Eocercomonas sp. AF411269':0.00447,'Uncultured eukaryote clone I 4 50 AB534514':0.03025):0.10748,('Cavernomonas mira FJ790718':0.08508,('Cercomonas plasmodialis AF411268':0.02033,'Cercomonas LargeSA AF411266':0.02587):0.03467):0.00946):0.049,(('Pseudopirsonia mucosa AJ5611':0.11368,'Auranticordis quadriverberis EU484394':0.14561):0.05843,(('Nudifila producta CCAP1911/1 HQ121434':0.10225,'Clautriavia biflagellata FJ919772':0.12272):0.02456,(((('Paulinella chromatophora X81811':0.07618,'Ovulinata parva strain CCAP1554/1 HQ121432':0.08369):0.0915,'Cyphoderia ampulla GU228896':0.28067):0.03094,('Assulina muscorum AJ418791':0.02905,('Euglypha acanthophora AJ41878':0.13011,(('Trinema enchelys AJ418792':0.01601,'Corythion dubium EF456751':0.01052):0.0376,(('Euglypha rotunda CCAP1520/1 X77692':0.0044,'Euglypha rotunda AJ418782':0.00427):0.02158,'Euglypha rotunda AJ418784':0.01786):0.05849):0.01013):0.01181):0.06047):0.04965,('Spongomonas solitaria CCAP 1971/1 HQ121435':0.2493,('Gyromitus sp. DQ211593':0.15346,('Thaumatomastix sp. GQ144681':0.05984,(('Thaumatomastix salina UIO286 FR846196':0.0503,'Uncultured CCW52 AY180026':0.06053):0.02193,(('Reckertia filosa AY268040':0.02058,('Uncultured 8-32 FN690392':0.03592,('Uncultured 3b-D9 FN690393':0.01714,'Uncultured 5-B11 FN690394':0.00391):0.00154):0.02421):0.01208,((('Uncultured Amb 18S 1434 EF023966','Uncultured Elev 18S 7011 EF025032'),'Uncultured Amb 18S 1319 EF023867':0.00171):0.02184,(('Allas diplophysa AF411262':0.01198,('Thaumatomonas seravini AF411259':0.00339,('Thaumatomonas sp. AF411260':0.00169,'Thaumatomonas sp. TMT002 DQ980486':0.00339))):0.00517,('Thaumatomonas sp. ATCC50250 AF411261':0.0121,(('Thaumatomonas sp. U42446':0.00684,('Thaumatomonas sp. SCCAP T1 AY496046','Thaumatomonas seravini AY496044':0.00512)):0.0017,'Thaumatomonas coloniensis DQ211591'):0.00162):0.00703):0.0303):0.03933):0.00578):0.00609):0.00903):0.01927):0.01299):0.00861):0.01486):0.00258);
END;