{"sha": "7a486baf17f28360e5b100094e86d95ecc5c82bf", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "0.0.0", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "otus": {"@id": "otus2808", "otu": [{"@id": "otu415365", "@about": "#otu415365", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lysmata debelius Phillipines"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 92497}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lysmata debelius"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128223"}]}, {"@id": "otu415366", "@about": "#otu415366", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lysmata vittata"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 180113}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lysmata vittata"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128224"}]}, {"@id": "otu415367", "@about": "#otu415367", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lysmata hochi EastFL"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 235869}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lysmata hochi"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128225"}]}, {"@id": "otu415368", "@about": "#otu415368", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lysmata nayaritensis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 235880}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lysmata nayaritensis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128226"}]}, {"@id": "otu415369", "@about": "#otu415369", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lysmata intermedia"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 235867}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lysmata intermedia"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128227"}]}, {"@id": "otu415370", "@about": "#otu415370", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Nikoides sp"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 686772}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Tozeuma carolinense"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128228"}]}, {"@id": "otu415371", "@about": "#otu415371", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Thor amboinensis HQ315572"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 558162}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Thor amboinensis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128229"}]}, {"@id": "otu415372", "@about": "#otu415372", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Parhippolyte cf uveae"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 5230653}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Parhippolyte cf. uveae JAB-2013"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128230"}]}, {"@id": "otu415373", "@about": "#otu415373", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lysmata wurdemanni Galveston"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 92494}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lysmata wurdemanni"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128231"}]}, {"@id": "otu415374", "@about": "#otu415374", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Merguia rhizophorae"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 686780}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Merguia rhizophorae"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128232"}]}, {"@id": "otu415375", "@about": "#otu415375", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lysmata seticaudata"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 450919}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lysmata seticaudata"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128233"}]}, {"@id": "otu415376", "@about": "#otu415376", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Hippolyte williamsi"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 810353}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Hippolyte williamsi"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128234"}]}, {"@id": "otu415377", "@about": "#otu415377", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Stylodactylus multidentatus GQ131908"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 147373}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Stylodactylus multidentatus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128235"}]}, {"@id": "otu415378", "@about": "#otu415378", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Mergia oligodon"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 180106}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Merguia oligodon"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128236"}]}, {"@id": "otu415379", "@about": "#otu415379", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Tozeuma zostericola"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128237"}]}, {"@id": "otu415380", "@about": "#otu415380", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Eualus gaimardii EU920923"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 737577}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Eualus gaimardii"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128238"}]}, {"@id": "otu415381", "@about": "#otu415381", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Betaeopsis aequimanus JX010760"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 767879}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Betaeopsis aequimanus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128239"}]}, {"@id": "otu415382", "@about": "#otu415382", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lysmata bahia"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 235875}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lysmata bahia"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128240"}]}, {"@id": "otu415383", "@about": "#otu415383", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Merhippolyte ancistrota"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 445786}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Merhippolyte ancistrota"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128241"}]}, {"@id": "otu415384", "@about": "#otu415384", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Exhippolysmata ensirostris"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 180102}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Exhippolysmata ensirostris"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128242"}]}, {"@id": "otu415385", "@about": "#otu415385", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Nenalpheus sibogae JX010761"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 1065715}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Nennalpheus sibogae"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128243"}]}, {"@id": "otu415386", "@about": "#otu415386", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Exhippolysmata oplophoroides"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 668365}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Exhippolysmata oplophoroides"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128244"}]}, {"@id": "otu415387", "@about": "#otu415387", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Betaeus lilianae JX010756"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 489269}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Betaeus lilianae"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128245"}]}, {"@id": "otu415388", "@about": "#otu415388", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lysmatella prima"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 808869}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lysmatella prima"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128246"}]}, {"@id": "otu415389", "@about": "#otu415389", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Alope orientalis HQ315559"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 808863}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Alope orientalis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128247"}]}, {"@id": "otu415390", "@about": "#otu415390", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lysmata californica"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 235871}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lysmata californica"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128248"}]}, {"@id": "otu415391", "@about": "#otu415391", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Heterocarpus sp01 GQ302725"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 4665889}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Heterocarpus abulbus"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128249"}]}, {"@id": "otu415392", "@about": "#otu415392", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lysmata pederseni"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 224705}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lysmata pederseni"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128250"}]}, {"@id": "otu415393", "@about": "#otu415393", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Hippolyte bifidirostris EU920927"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 343350}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Hippolyte bifidirostris"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128251"}]}, {"@id": "otu415394", "@about": "#otu415394", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lysmata gracilirostris"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 235862}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lysmata gracilirostris"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128252"}]}, {"@id": "otu415395", "@about": "#otu415395", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Parahippolyte misticia"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 808866}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Parhippolyte mistica"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128253"}]}, {"@id": "otu415396", "@about": "#otu415396", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Barbouria cubensis HQ315565"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 808860}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Barbouria cubensis"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128254"}]}, {"@id": "otu415397", "@about": "#otu415397", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:originalLabel", "@datatype": "xsd:string", "$": "Lysmata argentopunctata"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottId", "@datatype": "xsd:int", "$": 180104}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:ottTaxonName", "@datatype": "xsd:string", "$": "Lysmata argentopunctata"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:treebaseOTUId", "@datatype": "xsd:string", "$": "Tl1128255"}]}], "@about": "#otus2808"}, "trees": {"@otus": "otus2808", "@id": "trees2808", "tree": [{"@xsi:type": "nex:FloatTree", "node": [{"@root": true, "@id": "node1124325", "@about": "#node1124325"}, {"@id": "node1124326", "@about": "#node1124326"}, {"@otu": "otu415385", "@id": "node1124327", "@about": "#node1124327", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124328", "@about": "#node1124328"}, {"@otu": "otu415381", "@id": "node1124329", "@about": "#node1124329", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu415387", "@id": "node1124330", "@about": "#node1124330", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124331", "@about": "#node1124331"}, {"@otu": "otu415389", "@id": "node1124332", "@about": "#node1124332", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124333", "@about": "#node1124333"}, {"@otu": "otu415383", "@id": "node1124334", "@about": "#node1124334", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124335", "@about": "#node1124335"}, {"@id": "node1124336", "@about": "#node1124336"}, {"@otu": "otu415376", "@id": "node1124337", "@about": "#node1124337", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124338", "@about": "#node1124338"}, {"@otu": "otu415379", "@id": "node1124339", "@about": "#node1124339", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124340", "@about": "#node1124340"}, {"@otu": "otu415371", "@id": "node1124341", "@about": "#node1124341", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124342", "@about": "#node1124342"}, {"@otu": "otu415393", "@id": "node1124343", "@about": "#node1124343", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu415380", "@id": "node1124344", "@about": "#node1124344", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124345", "@about": "#node1124345"}, {"@otu": "otu415391", "@id": "node1124346", "@about": "#node1124346", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124347", "@about": "#node1124347"}, {"@otu": "otu415370", "@id": "node1124348", "@about": "#node1124348", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124349", "@about": "#node1124349"}, {"@otu": "otu415377", "@id": "node1124350", "@about": "#node1124350", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124351", "@about": "#node1124351"}, {"@id": "node1124352", "@about": "#node1124352"}, {"@otu": "otu415374", "@id": "node1124353", "@about": "#node1124353", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu415378", "@id": "node1124354", "@about": "#node1124354", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124355", "@about": "#node1124355"}, {"@id": "node1124356", "@about": "#node1124356"}, {"@otu": "otu415396", "@id": "node1124357", "@about": "#node1124357", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124358", "@about": "#node1124358"}, {"@otu": "otu415395", "@id": "node1124359", "@about": "#node1124359", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu415372", "@id": "node1124360", "@about": "#node1124360", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124361", "@about": "#node1124361"}, {"@id": "node1124362", "@about": "#node1124362"}, {"@otu": "otu415366", "@id": "node1124363", "@about": "#node1124363", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124364", "@about": "#node1124364"}, {"@otu": "otu415388", "@id": "node1124365", "@about": "#node1124365", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124366", "@about": "#node1124366"}, {"@otu": "otu415386", "@id": "node1124367", "@about": "#node1124367", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu415384", "@id": "node1124368", "@about": "#node1124368", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124369", "@about": "#node1124369"}, {"@id": "node1124370", "@about": "#node1124370"}, {"@otu": "otu415367", "@id": "node1124371", "@about": "#node1124371", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124372", "@about": "#node1124372"}, {"@otu": "otu415369", "@id": "node1124373", "@about": "#node1124373", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124374", "@about": "#node1124374"}, {"@otu": "otu415375", "@id": "node1124375", "@about": "#node1124375", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu415397", "@id": "node1124376", "@about": "#node1124376", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124377", "@about": "#node1124377"}, {"@id": "node1124378", "@about": "#node1124378"}, {"@otu": "otu415392", "@id": "node1124379", "@about": "#node1124379", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124380", "@about": "#node1124380"}, {"@otu": "otu415394", "@id": "node1124381", "@about": "#node1124381", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu415373", "@id": "node1124382", "@about": "#node1124382", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124383", "@about": "#node1124383"}, {"@otu": "otu415382", "@id": "node1124384", "@about": "#node1124384", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124385", "@about": "#node1124385"}, {"@otu": "otu415368", "@id": "node1124386", "@about": "#node1124386", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@id": "node1124387", "@about": "#node1124387"}, {"@otu": "otu415390", "@id": "node1124388", "@about": "#node1124388", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}, {"@otu": "otu415365", "@id": "node1124389", "@about": "#node1124389", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:isLeaf", "@datatype": "xsd:boolean", "$": true}]}], "edge": [{"@length": 0.08959525, "@source": "node1124325", "@target": "node1124326", "@id": "edge1124326", "@about": "#edge1124326"}, {"@length": 0.35830435, "@source": "node1124326", "@target": "node1124327", "@id": "edge1124327", "@about": "#edge1124327"}, {"@length": 0.0358069, "@source": "node1124326", "@target": "node1124328", "@id": "edge1124328", "@about": "#edge1124328"}, {"@length": 0.25386139, "@source": "node1124328", "@target": "node1124329", "@id": "edge1124329", "@about": "#edge1124329"}, {"@length": 0.28617263, "@source": "node1124328", "@target": "node1124330", "@id": "edge1124330", "@about": "#edge1124330"}, {"@length": 0.08959525, "@source": "node1124325", "@target": "node1124331", "@id": "edge1124331", "@about": "#edge1124331"}, {"@length": 0.40437459, "@source": "node1124331", "@target": "node1124332", "@id": "edge1124332", "@about": "#edge1124332"}, {"@length": 0.00850949, "@source": "node1124331", "@target": "node1124333", "@id": "edge1124333", "@about": "#edge1124333"}, {"@length": 0.20425614, "@source": "node1124333", "@target": "node1124334", "@id": "edge1124334", "@about": "#edge1124334"}, {"@length": 0.06168855, "@source": "node1124333", "@target": "node1124335", "@id": "edge1124335", "@about": "#edge1124335"}, {"@length": 0.06734429, "@source": "node1124335", "@target": "node1124336", "@id": "edge1124336", "@about": "#edge1124336"}, {"@length": 0.52859398, "@source": "node1124336", "@target": "node1124337", "@id": "edge1124337", "@about": "#edge1124337"}, {"@source": "node1124336", "@target": "node1124338", "@id": "edge1124338", "@about": "#edge1124338"}, {"@length": 0.28502212, "@source": "node1124338", "@target": "node1124339", "@id": "edge1124339", "@about": "#edge1124339"}, {"@length": 0.00745023, "@source": "node1124338", "@target": "node1124340", "@id": "edge1124340", "@about": "#edge1124340"}, {"@length": 0.2975076, "@source": "node1124340", "@target": "node1124341", "@id": "edge1124341", "@about": "#edge1124341"}, {"@length": 0.05314481, "@source": "node1124340", "@target": "node1124342", "@id": "edge1124342", "@about": "#edge1124342"}, {"@length": 0.21910241, "@source": "node1124342", "@target": "node1124343", "@id": "edge1124343", "@about": "#edge1124343"}, {"@length": 0.23636125, "@source": "node1124342", "@target": "node1124344", "@id": "edge1124344", "@about": "#edge1124344"}, {"@length": 0.02895869, "@source": "node1124335", "@target": "node1124345", "@id": "edge1124345", "@about": "#edge1124345"}, {"@length": 0.18108897, "@source": "node1124345", "@target": "node1124346", "@id": "edge1124346", "@about": "#edge1124346"}, {"@length": 0.04322924, "@source": "node1124345", "@target": "node1124347", "@id": "edge1124347", "@about": "#edge1124347"}, {"@length": 0.46874901, "@source": "node1124347", "@target": "node1124348", "@id": "edge1124348", "@about": "#edge1124348"}, {"@length": 0.0449006, "@source": "node1124347", "@target": "node1124349", "@id": "edge1124349", "@about": "#edge1124349"}, {"@length": 0.43799567, "@source": "node1124349", "@target": "node1124350", "@id": "edge1124350", "@about": "#edge1124350"}, {"@length": 0.04503372, "@source": "node1124349", "@target": "node1124351", "@id": "edge1124351", "@about": "#edge1124351"}, {"@length": 0.39454062, "@source": "node1124351", "@target": "node1124352", "@id": "edge1124352", "@about": "#edge1124352"}, {"@length": 1.294e-08, "@source": "node1124352", "@target": "node1124353", "@id": "edge1124353", "@about": "#edge1124353"}, {"@length": 0.0547633, "@source": "node1124352", "@target": "node1124354", "@id": "edge1124354", "@about": "#edge1124354"}, {"@length": 0.02236045, "@source": "node1124351", "@target": "node1124355", "@id": "edge1124355", "@about": "#edge1124355"}, {"@length": 0.20830703, "@source": "node1124355", "@target": "node1124356", "@id": "edge1124356", "@about": "#edge1124356"}, {"@length": 0.17087506, "@source": "node1124356", "@target": "node1124357", "@id": "edge1124357", "@about": "#edge1124357"}, {"@length": 0.1921162, "@source": "node1124356", "@target": "node1124358", "@id": "edge1124358", "@about": "#edge1124358"}, {"@length": 0.07647304, "@source": "node1124358", "@target": "node1124359", "@id": "edge1124359", "@about": "#edge1124359"}, {"@length": 0.11322013, "@source": "node1124358", "@target": "node1124360", "@id": "edge1124360", "@about": "#edge1124360"}, {"@length": 0.0799152, "@source": "node1124355", "@target": "node1124361", "@id": "edge1124361", "@about": "#edge1124361"}, {"@length": 0.11145805, "@source": "node1124361", "@target": "node1124362", "@id": "edge1124362", "@about": "#edge1124362"}, {"@length": 0.30106837, "@source": "node1124362", "@target": "node1124363", "@id": "edge1124363", "@about": "#edge1124363"}, {"@length": 0.16251954, "@source": "node1124362", "@target": "node1124364", "@id": "edge1124364", "@about": "#edge1124364"}, {"@length": 0.21880911, "@source": "node1124364", "@target": "node1124365", "@id": "edge1124365", "@about": "#edge1124365"}, {"@length": 0.04854083, "@source": "node1124364", "@target": "node1124366", "@id": "edge1124366", "@about": "#edge1124366"}, {"@length": 0.03657845, "@source": "node1124366", "@target": "node1124367", "@id": "edge1124367", "@about": "#edge1124367"}, {"@length": 0.02636468, "@source": "node1124366", "@target": "node1124368", "@id": "edge1124368", "@about": "#edge1124368"}, {"@source": "node1124361", "@target": "node1124369", "@id": "edge1124369", "@about": "#edge1124369"}, {"@length": 0.00834672, "@source": "node1124369", "@target": "node1124370", "@id": "edge1124370", "@about": "#edge1124370"}, {"@length": 0.23716895, "@source": "node1124370", "@target": "node1124371", "@id": "edge1124371", "@about": "#edge1124371"}, {"@length": 0.06156822, "@source": "node1124370", "@target": "node1124372", "@id": "edge1124372", "@about": "#edge1124372"}, {"@length": 0.10512787, "@source": "node1124372", "@target": "node1124373", "@id": "edge1124373", "@about": "#edge1124373"}, {"@length": 0.02455231, "@source": "node1124372", "@target": "node1124374", "@id": "edge1124374", "@about": "#edge1124374"}, {"@length": 0.06326255, "@source": "node1124374", "@target": "node1124375", "@id": "edge1124375", "@about": "#edge1124375"}, {"@length": 0.0654802, "@source": "node1124374", "@target": "node1124376", "@id": "edge1124376", "@about": "#edge1124376"}, {"@length": 0.07194523, "@source": "node1124369", "@target": "node1124377", "@id": "edge1124377", "@about": "#edge1124377"}, {"@length": 0.08220164, "@source": "node1124377", "@target": "node1124378", "@id": "edge1124378", "@about": "#edge1124378"}, {"@length": 0.12173957, "@source": "node1124378", "@target": "node1124379", "@id": "edge1124379", "@about": "#edge1124379"}, {"@length": 0.00990408, "@source": "node1124378", "@target": "node1124380", "@id": "edge1124380", "@about": "#edge1124380"}, {"@length": 0.08903891, "@source": "node1124380", "@target": "node1124381", "@id": "edge1124381", "@about": "#edge1124381"}, {"@length": 0.08685642, "@source": "node1124380", "@target": "node1124382", "@id": "edge1124382", "@about": "#edge1124382"}, {"@length": 0.01777159, "@source": "node1124377", "@target": "node1124383", "@id": "edge1124383", "@about": "#edge1124383"}, {"@length": 0.21683068, "@source": "node1124383", "@target": "node1124384", "@id": "edge1124384", "@about": "#edge1124384"}, {"@length": 0.00508231, "@source": "node1124383", "@target": "node1124385", "@id": "edge1124385", "@about": "#edge1124385"}, {"@length": 0.18386221, "@source": "node1124385", "@target": "node1124386", "@id": "edge1124386", "@about": "#edge1124386"}, {"@length": 0.0243679, "@source": "node1124385", "@target": "node1124387", "@id": "edge1124387", "@about": "#edge1124387"}, {"@length": 0.07836101, "@source": "node1124387", "@target": "node1124388", "@id": "edge1124388", "@about": "#edge1124388"}, {"@length": 0.10280118, "@source": "node1124387", "@target": "node1124389", "@id": "edge1124389", "@about": "#edge1124389"}], "@id": "tree6522", "@about": "#tree6522", "meta": [{"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthDescription", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthMode", "@datatype": "xsd:string", "$": "ot:substitutionCount"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:branchLengthTimeUnit", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatedType", "@datatype": "xsd:string", "$": "PAUP 1"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:inGroupClade", "@datatype": "xsd:string", "$": "node1124351"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:outGroupEdge", "@datatype": "xsd:string", "$": ""}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:specifiedRoot", "@datatype": "xsd:string", "$": "node1124325"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:tag", "@datatype": "xsd:string", "$": "choose me"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:tag", "@datatype": "xsd:string", "$": "ingroup added"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:unrootedTree", "@datatype": "xsd:boolean", "$": false}]}], "@about": "#trees2808"}, "@about": "#study", "meta": [{"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}, "@about": "#peyotl-validator"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:agents"}, {"annotation": [{"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": "otu415379", "@otusID": "otus2808", "@otuID": "otu415379"}, "@severity": "WARNING"}], "@about": "#peyotl-validator-event"}], "@xsi:type": "nex:LiteralMeta", "@property": "ot:annotationEvents"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:candidateTreeForSynthesis", "@datatype": "xsd:string", "$": "tree6522"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:curatorName", "@datatype": "xsd:string", "$": "Chris Owen"}, {"@href": "http://purl.org/phylo/treebase/phylows/study/TB2:S14330", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:dataDeposit"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalClade", "@datatype": "xsd:int", "$": 92496}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:focalCladeOTTTaxonName", "@datatype": "xsd:string", "$": "Lysmata"}, {"message": [], "@xsi:type": "nex:LiteralMeta", "@property": "ot:messages"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyId", "@datatype": "xsd:string", "$": "pg_2808"}, {"@href": "http://dx.doi.org/10.1016/j.ympev.2013.05.013", "@xsi:type": "nex:ResourceMeta", "@rel": "ot:studyPublication"}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyPublicationReference", "@datatype": "xsd:string", "$": "Baeza, J. 2013. Baeza, J.A. 2013. Multi-locus molecular phylogeny of broken-back shrimps (genus Lysmata and allies): a test of the 'Tomlinson-Ghiselin' hypothesis explaining the evolution of simultaneous hermaphroditism. Molecular Evolution and Phylogenetics 69 (1): 46-62."}, {"@xsi:type": "nex:LiteralMeta", "@property": "ot:studyYear", "@datatype": "xsd:int", "$": 2013}]}}, "branch2sha": {"master": "7a486baf17f28360e5b100094e86d95ecc5c82bf"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "f8a738aeda20a73750847484e110a85c7a3e0a12", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 10 Jun 2014 23:36:42 -0500", "date_ISO_8601": "2014-06-10 23:36:42 -0500", "relative_date": "12 years ago", "message_subject": "Migrating info from gcmdr to nexsons", "message_body": "using peyotl d69c8b180fce7703c7203a0b51712eab57e2988c\ndev/decorate_pg_studies_with_gcmdr_info.py\nto set:\n  ^ot:candidateTreeForSynthesis\n  ^ot:specifiedRoot, and\n  ^ot:unrootedTree\nproperties based on the use of the trees for synthesis study\nlists in gcmdr commit 35bf307e72bed4f59724762dde4a12965abcea92"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}