{"sha": "e24caffcb9a629531a59cc9a7e9a0755907df019", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2014-07-01T16:54:10.667Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "Birds"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2014-07-01T16:54:10.667Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:branchLengthMode"], "refersTo": {"@top": "trees", "@idref": "tree6670", "@treesID": "trees2876", "@treeID": "tree6670"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:ottId"], "refersTo": {"@top": "otus", "@idref": ["otu427232", "otu427238", "otu427243"], "@otusID": "otus2876", "@otuID": ["otu427232", "otu427238", "otu427243"]}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu427232", "otu427238", "otu427243"], "refersTo": {"@top": "otus", "@idref": "otus2876", "@otusID": "otus2876"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree6670"], "^ot:comment": "", "^ot:curatorName": ["Joseph Brown", "Joseph W. Brown", "Jonathan A Rees"], "^ot:dataDeposit": {"@href": ""}, "^ot:focalClade": 292469, "^ot:focalCladeOTTTaxonName": "Tinamidae", "^ot:messages": {"message": []}, "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["otus2876"], "^ot:studyId": "pg_2876", "^ot:studyPublication": {"@href": "https://sora.unm.edu/sites/default/files/journals/on/v015s/p0293-p0300.pdf"}, "^ot:studyPublicationReference": "Bertelli, Sara, Ana Luz Porzecanski. 2004. Tinamou (Tinamidae) systematics: a preliminary combined analysis of morphology and molecules. 2004. Ornithologia Neotropical 15: 293-299", "^ot:studyYear": 2004, "^ot:tag": [], "^ot:treesElementOrder": ["trees2876"], "otusById": {"otus2876": {"otuById": {"otu427197": {"^ot:originalLabel": "Crypturellus brevirostris", "^ot:ottId": 647584, "^ot:ottTaxonName": "Crypturellus brevirostris"}, "otu427198": {"^ot:originalLabel": "Crypturellus bartletti", "^ot:ottId": 3600798, "^ot:ottTaxonName": "Crypturellus bartletti"}, "otu427199": {"^ot:originalLabel": "Crypturellus casiquiare", "^ot:ottId": 3600788, "^ot:ottTaxonName": "Crypturellus casiquiare"}, "otu427200": {"^ot:originalLabel": "Crypturellus variegatus", "^ot:ottId": 983483, "^ot:ottTaxonName": "Crypturellus variegatus"}, "otu427201": {"^ot:originalLabel": "Crypturellus noctivagus", "^ot:ottId": 3600789, "^ot:ottTaxonName": "Crypturellus noctivagus"}, "otu427202": {"^ot:originalLabel": "Crypturellus erythropus", "^ot:ottId": 589927, "^ot:ottTaxonName": "Crypturellus erythropus"}, "otu427203": {"^ot:originalLabel": "Crypturellus duidae", "^ot:ottId": 3600790, "^ot:ottTaxonName": "Crypturellus duidae"}, "otu427204": {"^ot:originalLabel": "Crypturellus atrocapillus", "^ot:ottId": 3600795, "^ot:ottTaxonName": "Crypturellus atrocapillus"}, "otu427205": {"^ot:originalLabel": "Crypturellus soui", "^ot:ottId": 960236, "^ot:ottTaxonName": "Crypturellus soui"}, "otu427206": {"^ot:originalLabel": "Crypturellus transfasciatus", "^ot:ottId": 3600794, "^ot:ottTaxonName": "Crypturellus transfasciatus"}, "otu427207": {"^ot:originalLabel": "Crypturellus cinnamomeus", "^ot:ottId": 3600791, "^ot:ottTaxonName": "Crypturellus cinnamomeus"}, "otu427208": {"^ot:originalLabel": "Crypturellus undulatus", "^ot:ottId": 870607, "^ot:ottTaxonName": "Crypturellus undulatus"}, "otu427209": {"^ot:originalLabel": "Crypturellus strigulosus", "^ot:ottId": 167137, "^ot:ottTaxonName": "Crypturellus strigulosus"}, "otu427210": {"^ot:originalLabel": "Crypturellus boucardi", "^ot:ottId": 3600799, "^ot:ottTaxonName": "Crypturellus boucardi"}, "otu427211": {"^ot:originalLabel": "Crypturellus berlepschi", "^ot:ottId": 3600796, "^ot:ottTaxonName": "Crypturellus berlepschi"}, "otu427212": {"^ot:originalLabel": "Crypturellus cinereus", "^ot:ottId": 647586, "^ot:ottTaxonName": "Crypturellus cinereus"}, "otu427213": {"^ot:originalLabel": "Crypturellus ptaritepui", "^ot:ottId": 3600793, "^ot:ottTaxonName": "Crypturellus ptaritepui"}, "otu427214": {"^ot:originalLabel": "Crypturellus tataupa", "^ot:ottId": 758347, "^ot:ottTaxonName": "Crypturellus tataupa"}, "otu427215": {"^ot:originalLabel": "Crypturellus parvirostris", "^ot:ottId": 379420, "^ot:ottTaxonName": "Crypturellus parvirostris"}, "otu427216": {"^ot:originalLabel": "Crypturellus obsoletus", "^ot:ottId": 983480, "^ot:ottTaxonName": "Crypturellus obsoletus"}, "otu427217": {"^ot:originalLabel": "Crypturellus kerriae", "^ot:ottId": 3600797, "^ot:ottTaxonName": "Crypturellus kerriae"}, "otu427218": {"^ot:originalLabel": "Tinamus guttatus", "^ot:ottId": 306216, "^ot:ottTaxonName": "Tinamus guttatus"}, "otu427219": {"^ot:originalLabel": "Tinamus major", "^ot:ottId": 402466, "^ot:ottTaxonName": "Tinamus major"}, "otu427220": {"^ot:originalLabel": "Tinamus solitarius", "^ot:ottId": 3600785, "^ot:ottTaxonName": "Tinamus solitarius"}, "otu427221": {"^ot:originalLabel": "Tinamus tao", "^ot:ottId": 466704, "^ot:ottTaxonName": "Tinamus tao"}, "otu427222": {"^ot:originalLabel": "Tinamus osgoodi", "^ot:ottId": 3600786, "^ot:ottTaxonName": "Tinamus osgoodi"}, "otu427223": {"^ot:originalLabel": "Nothoprocta pentlandii", "^ot:ottId": 3600805, "^ot:ottTaxonName": "Nothoprocta pentlandii"}, "otu427224": {"^ot:originalLabel": "Nothoprocta taczanowskii", "^ot:ottId": 3600803, "^ot:ottTaxonName": "Nothoprocta taczanowskii"}, "otu427225": {"^ot:originalLabel": "Nothoprocta curvirostris", "^ot:ottId": 3600806, "^ot:ottTaxonName": "Nothoprocta curvirostris"}, "otu427226": {"^ot:originalLabel": "Nothoprocta perdicaria", "^ot:ottId": 402446, "^ot:ottTaxonName": "Nothoprocta perdicaria"}, "otu427227": {"^ot:originalLabel": "Nothoprocta kalinowskii", "^ot:ottId": 3600804, "^ot:ottTaxonName": "Nothoprocta kalinowskii"}, "otu427228": {"^ot:originalLabel": "Nothoprocta ornata", "^ot:ottId": 332613, "^ot:ottTaxonName": "Nothoprocta ornata"}, "otu427229": {"^ot:originalLabel": "Nothoprocta cinerascens", "^ot:ottId": 292464, "^ot:ottTaxonName": "Nothoprocta cinerascens"}, "otu427230": {"^ot:originalLabel": "Nothura maculosa", "^ot:ottId": 892276, "^ot:ottTaxonName": "Nothura maculosa"}, "otu427231": {"^ot:originalLabel": "Nothura chacoensis", "^ot:ottId": 3600802, "^ot:ottTaxonName": "Nothura chacoensis"}, "otu427232": {"^ot:originalLabel": "Nothura sp."}, "otu427233": {"^ot:originalLabel": "Nothura darwinii", "^ot:ottId": 892275, "^ot:ottTaxonName": "Nothura darwinii"}, "otu427234": {"^ot:originalLabel": "Nothura minor", "^ot:ottId": 3600800, "^ot:ottTaxonName": "Nothura minor"}, "otu427235": {"^ot:originalLabel": "Nothura boraquira", "^ot:ottId": 3600801, "^ot:ottTaxonName": "Nothura boraquira"}, "otu427236": {"^ot:originalLabel": "Taoniscus nanus", "^ot:ottId": 3600811, "^ot:ottTaxonName": "Taoniscus nanus"}, "otu427237": {"^ot:originalLabel": "Rhynchotus rufescens", "^ot:ottId": 224379, "^ot:ottTaxonName": "Rhynchotus rufescens"}, "otu427238": {"^ot:originalLabel": "Rhynchotus rufescens pallescens"}, "otu427239": {"^ot:originalLabel": "Rhynchotus rufescens macullicollis", "^ot:ottId": 3600787, "^ot:ottTaxonName": "Rhynchotus maculicollis"}, "otu427240": {"^ot:originalLabel": "Tinamotis ingoufi", "^ot:ottId": 599077, "^ot:ottTaxonName": "Tinamotis ingoufi"}, "otu427241": {"^ot:originalLabel": "Tinamotis pentlandii", "^ot:ottId": 599078, "^ot:ottTaxonName": "Tinamotis pentlandii"}, "otu427242": {"^ot:originalLabel": "Eudromia elegans", "^ot:ottId": 292461, "^ot:ottTaxonName": "Eudromia elegans"}, "otu427243": {"^ot:originalLabel": "Eudromia elegans albida"}, "otu427244": {"^ot:originalLabel": "Eudromia formosa", "^ot:ottId": 784522, "^ot:ottTaxonName": "Eudromia formosa"}, "otu427245": {"^ot:originalLabel": "Pterocnemia pennata", "^ot:ottId": 857860, "^ot:ottTaxonName": "Pterocnemia pennata"}, "otu427246": {"^ot:originalLabel": "Rhea americana", "^ot:ottId": 857864, "^ot:ottTaxonName": "Rhea americana"}, "otu427247": {"^ot:originalLabel": "Casuarius bennetti", "^ot:ottId": 402459, "^ot:ottTaxonName": "Casuarius bennetti"}, "otu427248": {"^ot:originalLabel": "Dinornis sp.", "^ot:ottId": 816655, "^ot:ottTaxonName": "Dinornis"}, "otu427249": {"^ot:originalLabel": "Struthio camelus", "^ot:ottId": 647692, "^ot:ottTaxonName": "Struthio camelus"}, "otu427250": {"^ot:originalLabel": "Apteryx australis", "^ot:ottId": 241834, "^ot:ottTaxonName": "Apteryx australis"}, "otu427251": {"^ot:originalLabel": "Megapodius freycinet", "^ot:ottId": 837568, "^ot:ottTaxonName": "Megapodius freycinet"}}}}, "treesById": {"trees2876": {"@otus": "otus2876", "^ot:treeElementOrder": ["tree6670"], "treeById": {"tree6670": {"@label": "Fig. 3 MP implied weights", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "Maximum parsimony ", "^ot:inGroupClade": "node1162318", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node1162316", "^ot:specifiedRoot": "node1162316", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node1162316": {"edge1162317": {"@source": "node1162316", "@target": "node1162317"}, "edge1162423": {"@source": "node1162316", "@target": "node1162423"}}, "node1162317": {"edge1162318": {"@source": "node1162317", "@target": "node1162318"}, "edge1162412": {"@source": "node1162317", "@target": "node1162412"}}, "node1162318": {"edge1162319": {"@source": "node1162318", "@target": "node1162319"}, "edge1162369": {"@source": "node1162318", "@target": "node1162369"}}, "node1162319": {"edge1162320": {"@source": "node1162319", "@target": "node1162320"}, "edge1162360": {"@source": "node1162319", "@target": "node1162360"}}, "node1162320": {"edge1162321": {"@source": "node1162320", "@target": "node1162321"}, "edge1162359": {"@source": "node1162320", "@target": "node1162359"}}, "node1162321": {"edge1162322": {"@source": "node1162321", "@target": "node1162322"}, "edge1162354": {"@source": "node1162321", "@target": "node1162354"}}, "node1162322": {"edge1162323": {"@source": "node1162322", "@target": "node1162323"}, "edge1162349": {"@source": "node1162322", "@target": "node1162349"}}, "node1162323": {"edge1162324": {"@source": "node1162323", "@target": "node1162324"}, "edge1162348": {"@source": "node1162323", "@target": "node1162348"}}, "node1162324": {"edge1162325": {"@source": "node1162324", "@target": "node1162325"}, "edge1162341": {"@source": "node1162324", "@target": "node1162341"}}, "node1162325": {"edge1162326": {"@source": "node1162325", "@target": "node1162326"}, "edge1162340": {"@source": "node1162325", "@target": "node1162340"}}, "node1162326": {"edge1162327": {"@source": "node1162326", "@target": "node1162327"}, "edge1162339": {"@source": "node1162326", "@target": "node1162339"}}, "node1162327": {"edge1162328": {"@source": "node1162327", "@target": "node1162328"}, "edge1162338": {"@source": "node1162327", "@target": "node1162338"}}, "node1162328": {"edge1162329": {"@source": "node1162328", "@target": "node1162329"}, "edge1162337": {"@source": "node1162328", "@target": "node1162337"}}, "node1162329": {"edge1162330": {"@source": "node1162329", "@target": "node1162330"}, "edge1162335": {"@source": "node1162329", "@target": "node1162335"}, "edge1162336": {"@source": "node1162329", "@target": "node1162336"}}, "node1162330": {"edge1162331": {"@source": "node1162330", "@target": "node1162331"}, "edge1162334": {"@source": "node1162330", "@target": "node1162334"}}, "node1162331": {"edge1162332": {"@source": "node1162331", "@target": "node1162332"}, "edge1162333": {"@source": "node1162331", "@target": "node1162333"}}, "node1162341": {"edge1162342": {"@source": "node1162341", "@target": "node1162342"}, "edge1162347": {"@source": "node1162341", "@target": "node1162347"}}, "node1162342": {"edge1162343": {"@source": "node1162342", "@target": "node1162343"}, "edge1162346": {"@source": "node1162342", "@target": "node1162346"}}, "node1162343": {"edge1162344": {"@source": "node1162343", "@target": "node1162344"}, "edge1162345": {"@source": "node1162343", "@target": "node1162345"}}, "node1162349": {"edge1162350": {"@source": "node1162349", "@target": "node1162350"}, "edge1162353": {"@source": "node1162349", "@target": "node1162353"}}, "node1162350": {"edge1162351": {"@source": "node1162350", "@target": "node1162351"}, "edge1162352": {"@source": "node1162350", "@target": "node1162352"}}, "node1162354": {"edge1162355": {"@source": "node1162354", "@target": "node1162355"}, "edge1162358": {"@source": "node1162354", "@target": "node1162358"}}, "node1162355": {"edge1162356": {"@source": "node1162355", "@target": "node1162356"}, "edge1162357": {"@source": "node1162355", "@target": "node1162357"}}, "node1162360": {"edge1162361": {"@source": "node1162360", "@target": "node1162361"}, "edge1162364": {"@source": "node1162360", "@target": "node1162364"}}, "node1162361": {"edge1162362": {"@source": "node1162361", "@target": "node1162362"}, "edge1162363": {"@source": "node1162361", "@target": "node1162363"}}, "node1162364": {"edge1162365": {"@source": "node1162364", "@target": "node1162365"}, "edge1162368": {"@source": "node1162364", "@target": "node1162368"}}, "node1162365": {"edge1162366": {"@source": "node1162365", "@target": "node1162366"}, "edge1162367": {"@source": "node1162365", "@target": "node1162367"}}, "node1162369": {"edge1162370": {"@source": "node1162369", "@target": "node1162370"}, "edge1162403": {"@source": "node1162369", "@target": "node1162403"}}, "node1162370": {"edge1162371": {"@source": "node1162370", "@target": "node1162371"}, "edge1162398": {"@source": "node1162370", "@target": "node1162398"}}, "node1162371": {"edge1162372": {"@source": "node1162371", "@target": "node1162372"}, "edge1162385": {"@source": "node1162371", "@target": "node1162385"}}, "node1162372": {"edge1162373": {"@source": "node1162372", "@target": "node1162373"}, "edge1162384": {"@source": "node1162372", "@target": "node1162384"}}, "node1162373": {"edge1162374": {"@source": "node1162373", "@target": "node1162374"}, "edge1162381": {"@source": "node1162373", "@target": "node1162381"}}, "node1162374": {"edge1162375": {"@source": "node1162374", "@target": "node1162375"}, "edge1162378": {"@source": "node1162374", "@target": "node1162378"}}, "node1162375": {"edge1162376": {"@source": "node1162375", "@target": "node1162376"}, "edge1162377": {"@source": "node1162375", "@target": "node1162377"}}, "node1162378": {"edge1162379": {"@source": "node1162378", "@target": "node1162379"}, "edge1162380": {"@source": "node1162378", "@target": "node1162380"}}, "node1162381": {"edge1162382": {"@source": "node1162381", "@target": "node1162382"}, "edge1162383": {"@source": "node1162381", "@target": "node1162383"}}, "node1162385": {"edge1162386": {"@source": "node1162385", "@target": "node1162386"}, "edge1162397": {"@source": "node1162385", "@target": "node1162397"}}, "node1162386": {"edge1162387": {"@source": "node1162386", "@target": "node1162387"}, "edge1162396": {"@source": "node1162386", "@target": "node1162396"}}, "node1162387": {"edge1162388": {"@source": "node1162387", "@target": "node1162388"}, "edge1162395": {"@source": "node1162387", "@target": "node1162395"}}, "node1162388": {"edge1162389": {"@source": "node1162388", "@target": "node1162389"}, "edge1162394": {"@source": "node1162388", "@target": "node1162394"}}, "node1162389": {"edge1162390": {"@source": "node1162389", "@target": "node1162390"}, "edge1162393": {"@source": "node1162389", "@target": "node1162393"}}, "node1162390": {"edge1162391": {"@source": "node1162390", "@target": "node1162391"}, "edge1162392": {"@source": "node1162390", "@target": "node1162392"}}, "node1162398": {"edge1162399": {"@source": "node1162398", "@target": "node1162399"}, "edge1162402": {"@source": "node1162398", "@target": "node1162402"}}, "node1162399": {"edge1162400": {"@source": "node1162399", "@target": "node1162400"}, "edge1162401": {"@source": "node1162399", "@target": "node1162401"}}, "node1162403": {"edge1162404": {"@source": "node1162403", "@target": "node1162404"}, "edge1162407": {"@source": "node1162403", "@target": "node1162407"}}, "node1162404": {"edge1162405": {"@source": "node1162404", "@target": "node1162405"}, "edge1162406": {"@source": "node1162404", "@target": "node1162406"}}, "node1162407": {"edge1162408": {"@source": "node1162407", "@target": "node1162408"}, "edge1162411": {"@source": "node1162407", "@target": "node1162411"}}, "node1162408": {"edge1162409": {"@source": "node1162408", "@target": "node1162409"}, "edge1162410": {"@source": "node1162408", "@target": "node1162410"}}, "node1162412": {"edge1162413": {"@source": "node1162412", "@target": "node1162413"}, "edge1162416": {"@source": "node1162412", "@target": "node1162416"}}, "node1162413": {"edge1162414": {"@source": "node1162413", "@target": "node1162414"}, "edge1162415": {"@source": "node1162413", "@target": "node1162415"}}, "node1162416": {"edge1162417": {"@source": "node1162416", "@target": "node1162417"}, "edge1162420": {"@source": "node1162416", "@target": "node1162420"}}, "node1162417": {"edge1162418": {"@source": "node1162417", "@target": "node1162418"}, "edge1162419": {"@source": "node1162417", "@target": "node1162419"}}, "node1162420": {"edge1162421": {"@source": "node1162420", "@target": "node1162421"}, "edge1162422": {"@source": "node1162420", "@target": "node1162422"}}}, "nodeById": {"node1162316": {"@root": true}, "node1162317": {}, "node1162318": {}, "node1162319": {}, "node1162320": {}, "node1162321": {}, "node1162322": {}, "node1162323": {}, "node1162324": {}, "node1162325": {}, "node1162326": {}, "node1162327": {}, "node1162328": {}, "node1162329": {}, "node1162330": {}, "node1162331": {}, "node1162332": {"@otu": "otu427197"}, "node1162333": {"@otu": "otu427198"}, "node1162334": {"@otu": "otu427199"}, "node1162335": {"@otu": "otu427200"}, "node1162336": {"@otu": "otu427201"}, "node1162337": {"@otu": "otu427202"}, "node1162338": {"@otu": "otu427203"}, "node1162339": {"@otu": "otu427204"}, "node1162340": {"@otu": "otu427205"}, "node1162341": {}, "node1162342": {}, "node1162343": {}, "node1162344": {"@otu": "otu427206"}, "node1162345": {"@otu": "otu427207"}, "node1162346": {"@otu": "otu427208"}, "node1162347": {"@otu": "otu427209"}, "node1162348": {"@otu": "otu427210"}, "node1162349": {}, "node1162350": {}, "node1162351": {"@otu": "otu427211"}, "node1162352": {"@otu": "otu427212"}, "node1162353": {"@otu": "otu427213"}, "node1162354": {}, "node1162355": {}, "node1162356": {"@otu": "otu427214"}, "node1162357": {"@otu": "otu427215"}, "node1162358": {"@otu": "otu427216"}, "node1162359": {"@otu": "otu427217"}, "node1162360": {}, "node1162361": {}, "node1162362": {"@otu": "otu427218"}, "node1162363": {"@otu": "otu427219"}, "node1162364": {}, "node1162365": {}, "node1162366": {"@otu": "otu427220"}, "node1162367": {"@otu": "otu427221"}, "node1162368": {"@otu": "otu427222"}, "node1162369": {}, "node1162370": {}, "node1162371": {}, "node1162372": {}, "node1162373": {}, "node1162374": {}, "node1162375": {}, "node1162376": {"@otu": "otu427223"}, "node1162377": {"@otu": "otu427224"}, "node1162378": {}, "node1162379": {"@otu": "otu427225"}, "node1162380": {"@otu": "otu427226"}, "node1162381": {}, "node1162382": {"@otu": "otu427227"}, "node1162383": {"@otu": "otu427228"}, "node1162384": {"@otu": "otu427229"}, "node1162385": {}, "node1162386": {}, "node1162387": {}, "node1162388": {}, "node1162389": {}, "node1162390": {}, "node1162391": {"@otu": "otu427230"}, "node1162392": {"@otu": "otu427231"}, "node1162393": {"@otu": "otu427232"}, "node1162394": {"@otu": "otu427233"}, "node1162395": {"@otu": "otu427234"}, "node1162396": {"@otu": "otu427235"}, "node1162397": {"@otu": "otu427236"}, "node1162398": {}, "node1162399": {}, "node1162400": {"@otu": "otu427237"}, "node1162401": {"@otu": "otu427238"}, "node1162402": {"@otu": "otu427239"}, "node1162403": {}, "node1162404": {}, "node1162405": {"@otu": "otu427240"}, "node1162406": {"@otu": "otu427241"}, "node1162407": {}, "node1162408": {}, "node1162409": {"@otu": "otu427242"}, "node1162410": {"@otu": "otu427243"}, "node1162411": {"@otu": "otu427244"}, "node1162412": {}, "node1162413": {}, "node1162414": {"@otu": "otu427245"}, "node1162415": {"@otu": "otu427246"}, "node1162416": {}, "node1162417": {}, "node1162418": {"@otu": "otu427247"}, "node1162419": {"@otu": "otu427248"}, "node1162420": {}, "node1162421": {"@otu": "otu427249"}, "node1162422": {"@otu": "otu427250"}, "node1162423": {"@otu": "otu427251"}}}}}}}}, "branch2sha": {"master": "e24caffcb9a629531a59cc9a7e9a0755907df019"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "5cf8d24e9222bb6022860bd86cf80347bcb952b4", "author_name": "Joseph W. Brown", "author_email": "ANONYMOUS", "date": "Thu, 31 Jul 2014 03:11:49 +0000", "date_ISO_8601": "2014-07-31 03:11:49 +0000", "relative_date": "12 years ago", "message_subject": "mapping", "message_body": "(Update Study #pg_2876 via OpenTree API)"}, {"id": "bfa358ef481fb0d09e8da1597505ec4a34bd9282", "author_name": "Joseph W. Brown", "author_email": "ANONYMOUS", "date": "Thu, 31 Jul 2014 03:05:05 +0000", "date_ISO_8601": "2014-07-31 03:05:05 +0000", "relative_date": "12 years ago", "message_subject": "mapping", "message_body": "(Update Study #pg_2876 via OpenTree API)"}, {"id": "fbd7a6be94602490ac05797ffe72658093d20fcb", "author_name": "Jonathan A Rees", "author_email": "jar398@mumble.net", "date": "Sun, 20 Jul 2014 17:26:52 +0000", "date_ISO_8601": "2014-07-20 17:26:52 +0000", "relative_date": "12 years ago", "message_subject": "Added URL (seems to not have a DOI)", "message_body": "(Update Study #pg_2876 via OpenTree API)"}, {"id": "6547b71a88c09f02c4b2bf33752bbdb7c670f2e6", "author_name": "Joseph W. Brown", "author_email": "ANONYMOUS", "date": "Tue, 1 Jul 2014 17:54:48 +0100", "date_ISO_8601": "2014-07-01 17:54:48 +0100", "relative_date": "12 years ago", "message_subject": "fix tree name", "message_body": "(Update Study #pg_2876 via OpenTree API)"}, {"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "f8a738aeda20a73750847484e110a85c7a3e0a12", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 10 Jun 2014 23:36:42 -0500", "date_ISO_8601": "2014-06-10 23:36:42 -0500", "relative_date": "12 years ago", "message_subject": "Migrating info from gcmdr to nexsons", "message_body": "using peyotl d69c8b180fce7703c7203a0b51712eab57e2988c\ndev/decorate_pg_studies_with_gcmdr_info.py\nto set:\n  ^ot:candidateTreeForSynthesis\n  ^ot:specifiedRoot, and\n  ^ot:unrootedTree\nproperties based on the use of the trees for synthesis study\nlists in gcmdr commit 35bf307e72bed4f59724762dde4a12965abcea92"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}