{"sha": "1bbbe21bdd9a32ef81abeb3f038a977fdc0e8e7b", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2014-10-07T12:29:56.621Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "All life"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2014-10-07T12:29:56.621Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu160442", "otu160444", "otu160446", "otu160450", "otu160458", "otu160459", "otu160460", "otu160462", "otu160464", "otu160471", "otu160472", "otu160473", "otu160480", "otu160484", "otu160486", "otu160488", "otu160491", "otu160495", "otu160497", "otu160498"], "refersTo": {"@top": "otus", "@idref": "otus448", "@otusID": "otus448"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu160443", "otu160448", "otu160466", "otu160467", "otu160469", "otu160475", "otu160479", "otu160481", "otu160489", "otu160500"], "refersTo": {"@top": "otus", "@idref": "otus448", "@otusID": "otus448"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu160445", "otu160474", "otu160476", "otu160482", "otu160483", "otu160492", "otu160493", "otu160494"], "refersTo": {"@top": "otus", "@idref": "otus448", "@otusID": "otus448"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu160447", "otu160449", "otu160451", "otu160452", "otu160453", "otu160455", "otu160456", "otu160457", "otu160461", "otu160463", "otu160468", "otu160470", "otu160477", "otu160478", "otu160485", "otu160487", "otu160490", "otu160496", "otu160499"], "refersTo": {"@top": "otus", "@idref": "otus448", "@otusID": "otus448"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu160454", "otu160465"], "refersTo": {"@top": "otus", "@idref": "otus448", "@otusID": "otus448"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree5577", "@treesID": "trees448", "@treeID": "tree5577"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree569", "@treesID": "trees448", "@treeID": "tree569"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": [], "^ot:comment": "", "^ot:curatorName": ["Romina Gazis", "Jonathan A Rees", "Karen Cranston"], "^ot:dataDeposit": {"@href": "http://purl.org/phylo/treebase/phylows/study/TB2:S1387"}, "^ot:focalCladeOTTTaxonName": "", "^ot:messages": {"message": []}, "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["otus448"], "^ot:studyId": "pg_448", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1016/j.mycres.2005.11.013"}, "^ot:studyPublicationReference": "Taylor, Andy FS, Alan E. Hills, Giampaolo Simonini, Ernst E. Both, and Ursula Eberhardt. \"Detection of species within the< i> Xerocomus subtomentosus</i> complex in Europe using rDNA\u2013ITS sequences.\" Mycological research 110, no. 3 (2006): 276-287.", "^ot:studyYear": 2006, "^ot:tag": [], "^ot:treesElementOrder": ["trees448"], "otusById": {"otus448": {"otuById": {"otu160442": {"^ot:originalLabel": "Xerocomus ferrugineus 1137", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65505"}, "otu160443": {"^ot:originalLabel": "Xerocomus chrysonemus 1154", "^ot:ottId": 730967, "^ot:ottTaxonName": "Xerocomus chrysonemus", "^ot:treebaseOTUId": "Tl65506"}, "otu160444": {"^ot:originalLabel": "Xerocomus ferrugineus 599", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65507"}, "otu160445": {"^ot:originalLabel": "Boletus spadiceus 1106", "^ot:ottId": 321322, "^ot:ottTaxonName": "Boletus spadiceus", "^ot:treebaseOTUId": "Tl65508"}, "otu160446": {"^ot:originalLabel": "Xerocomus ferrugineus 1136", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65509"}, "otu160447": {"^ot:originalLabel": "Xerocomus subtementosus 622", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65510"}, "otu160448": {"^ot:originalLabel": "Xerocomus chrysonemus 725", "^ot:ottId": 730967, "^ot:ottTaxonName": "Xerocomus chrysonemus", "^ot:treebaseOTUId": "Tl65511"}, "otu160449": {"^ot:originalLabel": "Xerocomus subtomentosus 1251", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65512"}, "otu160450": {"^ot:originalLabel": "Xerocomus ferrugineus 1157", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65513"}, "otu160451": {"^ot:originalLabel": "Xerocomus subtomentosus 1569", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65514"}, "otu160452": {"^ot:originalLabel": "Xerocomus subtomentosus 1143b", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65515"}, "otu160453": {"^ot:originalLabel": "Xerocomus subtomentosus 1251b", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65516"}, "otu160454": {"^ot:originalLabel": "Xerocomus sp 1142", "^ot:ottId": 685643, "^ot:ottTaxonName": "Boletus", "^ot:treebaseOTUId": "Tl65517"}, "otu160455": {"^ot:originalLabel": "Xerocomus subtomentosus 1249b", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65518"}, "otu160456": {"^ot:originalLabel": "Xerocomus subtomentosus 1248b", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65519"}, "otu160457": {"^ot:originalLabel": "Xerocomus subtomentosus f. rubrocinctus", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65520"}, "otu160458": {"^ot:originalLabel": "Xerocomus ferrugineus 1160", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65521"}, "otu160459": {"^ot:originalLabel": "Boletus citrinovirens", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65522"}, "otu160460": {"^ot:originalLabel": "Xerocomus ferrugineus 1138", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65523"}, "otu160461": {"^ot:originalLabel": "Xerocomus subtomentosus 648b", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65524"}, "otu160462": {"^ot:originalLabel": "Xerocomus ferrugineus var. citrinovirens 1156", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65525"}, "otu160463": {"^ot:originalLabel": "Xerocomus subtomentosus 648", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65526"}, "otu160464": {"^ot:originalLabel": "Xerocomus ferrugineus 602", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65527"}, "otu160465": {"^ot:originalLabel": "Xerocomus sp 813", "^ot:ottId": 685643, "^ot:ottTaxonName": "Boletus", "^ot:treebaseOTUId": "Tl65528"}, "otu160466": {"^ot:originalLabel": "Xerocomus chrysonemus 1150", "^ot:ottId": 730967, "^ot:ottTaxonName": "Xerocomus chrysonemus", "^ot:treebaseOTUId": "Tl65529"}, "otu160467": {"^ot:originalLabel": "Xerocomus chrysonemus 1151", "^ot:ottId": 730967, "^ot:ottTaxonName": "Xerocomus chrysonemus", "^ot:treebaseOTUId": "Tl65530"}, "otu160468": {"^ot:originalLabel": "Xerocomus subtomentosus 1141", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65531"}, "otu160469": {"^ot:originalLabel": "Xerocomus chrysonemus 1155", "^ot:ottId": 730967, "^ot:ottTaxonName": "Xerocomus chrysonemus", "^ot:treebaseOTUId": "Tl65532"}, "otu160470": {"^ot:originalLabel": "Xerocomus subtomentosus 1144", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65533"}, "otu160471": {"^ot:originalLabel": "Xerocomus ferrugineus 1158", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65534"}, "otu160472": {"^ot:originalLabel": "Xerocomus ferrugineus 1311", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65535"}, "otu160473": {"^ot:originalLabel": "Xerocomus ferrugineus var. citrinovirens 1139", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65536"}, "otu160474": {"^ot:originalLabel": "Boletus spadiceus 1127", "^ot:ottId": 321322, "^ot:ottTaxonName": "Boletus spadiceus", "^ot:treebaseOTUId": "Tl65537"}, "otu160475": {"^ot:originalLabel": "Xerocomus chrysonemus 1147", "^ot:ottId": 730967, "^ot:ottTaxonName": "Xerocomus chrysonemus", "^ot:treebaseOTUId": "Tl65538"}, "otu160476": {"^ot:originalLabel": "Boletus spadiceus 1122", "^ot:ottId": 321322, "^ot:ottTaxonName": "Boletus spadiceus", "^ot:treebaseOTUId": "Tl65539"}, "otu160477": {"^ot:originalLabel": "Xerocomus subtomentosus 1146", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65540"}, "otu160478": {"^ot:originalLabel": "Xerocomus subtomentosus 1249", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65541"}, "otu160479": {"^ot:originalLabel": "Xerocomus chrysonemus 1149", "^ot:ottId": 730967, "^ot:ottTaxonName": "Xerocomus chrysonemus", "^ot:treebaseOTUId": "Tl65542"}, "otu160480": {"^ot:originalLabel": "Xerocomus ferrugineus 1130", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65543"}, "otu160481": {"^ot:originalLabel": "Xerocomus chrysonemus 1148", "^ot:ottId": 730967, "^ot:ottTaxonName": "Xerocomus chrysonemus", "^ot:treebaseOTUId": "Tl65544"}, "otu160482": {"^ot:originalLabel": "Boletus spadiceus 1123", "^ot:ottId": 321322, "^ot:ottTaxonName": "Boletus spadiceus", "^ot:treebaseOTUId": "Tl65545"}, "otu160483": {"^ot:originalLabel": "Boletus spadiceus 1126", "^ot:ottId": 321322, "^ot:ottTaxonName": "Boletus spadiceus", "^ot:treebaseOTUId": "Tl65546"}, "otu160484": {"^ot:originalLabel": "Xerocomus ferrugineus var. citrinovirens 1131", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65547"}, "otu160485": {"^ot:originalLabel": "Xerocomus subtomentosus 1140", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65548"}, "otu160486": {"^ot:originalLabel": "Xerocomus ferrugineus 1134", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65549"}, "otu160487": {"^ot:originalLabel": "Xerocomus subtomentosus 1248", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65550"}, "otu160488": {"^ot:originalLabel": "Xerocomus ferrugineus 601", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65551"}, "otu160489": {"^ot:originalLabel": "Xerocomus chrysonemus 1153", "^ot:ottId": 730967, "^ot:ottTaxonName": "Xerocomus chrysonemus", "^ot:treebaseOTUId": "Tl65552"}, "otu160490": {"^ot:originalLabel": "Xerocomus subtomentosus 1162", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65553"}, "otu160491": {"^ot:originalLabel": "Xerocomus ferrugineus 1132", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65554"}, "otu160492": {"^ot:originalLabel": "Boletus spadiceus 1119", "^ot:ottId": 321322, "^ot:ottTaxonName": "Boletus spadiceus", "^ot:treebaseOTUId": "Tl65555"}, "otu160493": {"^ot:originalLabel": "Boletus spadiceus 1129", "^ot:ottId": 321322, "^ot:ottTaxonName": "Boletus spadiceus", "^ot:treebaseOTUId": "Tl65556"}, "otu160494": {"^ot:originalLabel": "Boletus spadiceus 1125", "^ot:ottId": 321322, "^ot:ottTaxonName": "Boletus spadiceus", "^ot:treebaseOTUId": "Tl65557"}, "otu160495": {"^ot:originalLabel": "Xerocomus ferrugineus 1570", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65558"}, "otu160496": {"^ot:originalLabel": "Xerocomus subtomentosus 1569b", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65559"}, "otu160497": {"^ot:originalLabel": "Xerocomus ferrugineus 1135", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65560"}, "otu160498": {"^ot:originalLabel": "Xerocomus ferrugineus var. citrinovirens 1133", "^ot:ottId": 5303924, "^ot:ottTaxonName": "Boletus ferrugineus", "^ot:treebaseOTUId": "Tl65561"}, "otu160499": {"^ot:originalLabel": "Xerocomus subtomentosus 1143", "^ot:ottId": 500350, "^ot:ottTaxonName": "Boletus subtomentosus", "^ot:treebaseOTUId": "Tl65562"}, "otu160500": {"^ot:originalLabel": "Xerocomus chrysonemus 1152", "^ot:ottId": 730967, "^ot:ottTaxonName": "Xerocomus chrysonemus", "^ot:treebaseOTUId": "Tl65563"}}}}, "treesById": {"trees448": {"@otus": "otus448", "^ot:treeElementOrder": ["tree569", "tree5577"], "treeById": {"tree5577": {"@label": "Untitled (tree5577)", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "NJ, ITS (rooted)", "^ot:inGroupClade": "node956057", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node956057", "^ot:specifiedRoot": "", "^ot:tag": [], "^ot:unrootedTree": true, "edgeBySourceId": {"node956057": {"edge956058": {"@source": "node956057", "@target": "node956058"}, "edge956095": {"@source": "node956057", "@target": "node956095"}}, "node956058": {"edge956059": {"@source": "node956058", "@target": "node956059"}, "edge956062": {"@source": "node956058", "@target": "node956062"}}, "node956059": {"edge956060": {"@source": "node956059", "@target": "node956060"}, "edge956061": {"@source": "node956059", "@target": "node956061"}}, "node956062": {"edge956063": {"@source": "node956062", "@target": "node956063"}, "edge956064": {"@source": "node956062", "@target": "node956064"}}, "node956064": {"edge956065": {"@source": "node956064", "@target": "node956065"}, "edge956074": {"@source": "node956064", "@target": "node956074"}}, "node956065": {"edge956066": {"@source": "node956065", "@target": "node956066"}, "edge956073": {"@source": "node956065", "@target": "node956073"}}, "node956066": {"edge956067": {"@source": "node956066", "@target": "node956067"}, "edge956072": {"@source": "node956066", "@target": "node956072"}}, "node956067": {"edge956068": {"@source": "node956067", "@target": "node956068"}, "edge956071": {"@source": "node956067", "@target": "node956071"}}, "node956068": {"edge956069": {"@source": "node956068", "@target": "node956069"}, "edge956070": {"@source": "node956068", "@target": "node956070"}}, "node956074": {"edge956075": {"@source": "node956074", "@target": "node956075"}, "edge956076": {"@source": "node956074", "@target": "node956076"}}, "node956076": {"edge956077": {"@source": "node956076", "@target": "node956077"}, "edge956094": {"@source": "node956076", "@target": "node956094"}}, "node956077": {"edge956078": {"@source": "node956077", "@target": "node956078"}, "edge956079": {"@source": "node956077", "@target": "node956079"}}, "node956079": {"edge956080": {"@source": "node956079", "@target": "node956080"}, "edge956081": {"@source": "node956079", "@target": "node956081"}}, "node956081": {"edge956082": {"@source": "node956081", "@target": "node956082"}, "edge956093": {"@source": "node956081", "@target": "node956093"}}, "node956082": {"edge956083": {"@source": "node956082", "@target": "node956083"}, "edge956084": {"@source": "node956082", "@target": "node956084"}}, "node956084": {"edge956085": {"@source": "node956084", "@target": "node956085"}, "edge956092": {"@source": "node956084", "@target": "node956092"}}, "node956085": {"edge956086": {"@source": "node956085", "@target": "node956086"}, "edge956091": {"@source": "node956085", "@target": "node956091"}}, "node956086": {"edge956087": {"@source": "node956086", "@target": "node956087"}, "edge956088": {"@source": "node956086", "@target": "node956088"}}, "node956088": {"edge956089": {"@source": "node956088", "@target": "node956089"}, "edge956090": {"@source": "node956088", "@target": "node956090"}}, "node956095": {"edge956096": {"@source": "node956095", "@target": "node956096"}, "edge956155": {"@source": "node956095", "@target": "node956155"}}, "node956096": {"edge956097": {"@source": "node956096", "@target": "node956097"}, "edge956100": {"@source": "node956096", "@target": "node956100"}}, "node956097": {"edge956098": {"@source": "node956097", "@target": "node956098"}, "edge956099": {"@source": "node956097", "@target": "node956099"}}, "node956100": {"edge956101": {"@source": "node956100", "@target": "node956101"}, "edge956152": {"@source": "node956100", "@target": "node956152"}}, "node956101": {"edge956102": {"@source": "node956101", "@target": "node956102"}, "edge956141": {"@source": "node956101", "@target": "node956141"}}, "node956102": {"edge956103": {"@source": "node956102", "@target": "node956103"}, "edge956140": {"@source": "node956102", "@target": "node956140"}}, "node956103": {"edge956104": {"@source": "node956103", "@target": "node956104"}, "edge956139": {"@source": "node956103", "@target": "node956139"}}, "node956104": {"edge956105": {"@source": "node956104", "@target": "node956105"}, "edge956138": {"@source": "node956104", "@target": "node956138"}}, "node956105": {"edge956106": {"@source": "node956105", "@target": "node956106"}, "edge956135": {"@source": "node956105", "@target": "node956135"}}, "node956106": {"edge956107": {"@source": "node956106", "@target": "node956107"}, "edge956134": {"@source": "node956106", "@target": "node956134"}}, "node956107": {"edge956108": {"@source": "node956107", "@target": "node956108"}, "edge956133": {"@source": "node956107", "@target": "node956133"}}, "node956108": {"edge956109": {"@source": "node956108", "@target": "node956109"}, "edge956132": {"@source": "node956108", "@target": "node956132"}}, "node956109": {"edge956110": {"@source": "node956109", "@target": "node956110"}, "edge956131": {"@source": "node956109", "@target": "node956131"}}, "node956110": {"edge956111": {"@source": "node956110", "@target": "node956111"}, "edge956112": {"@source": "node956110", "@target": "node956112"}}, "node956112": {"edge956113": {"@source": "node956112", "@target": "node956113"}, "edge956128": {"@source": "node956112", "@target": "node956128"}}, "node956113": {"edge956114": {"@source": "node956113", "@target": "node956114"}, "edge956125": {"@source": "node956113", "@target": "node956125"}}, "node956114": {"edge956115": {"@source": "node956114", "@target": "node956115"}, "edge956124": {"@source": "node956114", "@target": "node956124"}}, "node956115": {"edge956116": {"@source": "node956115", "@target": "node956116"}, "edge956117": {"@source": "node956115", "@target": "node956117"}}, "node956117": {"edge956118": {"@source": "node956117", "@target": "node956118"}, "edge956123": {"@source": "node956117", "@target": "node956123"}}, "node956118": {"edge956119": {"@source": "node956118", "@target": "node956119"}, "edge956122": {"@source": "node956118", "@target": "node956122"}}, "node956119": {"edge956120": {"@source": "node956119", "@target": "node956120"}, "edge956121": {"@source": "node956119", "@target": "node956121"}}, "node956125": {"edge956126": {"@source": "node956125", "@target": "node956126"}, "edge956127": {"@source": "node956125", "@target": "node956127"}}, "node956128": {"edge956129": {"@source": "node956128", "@target": "node956129"}, "edge956130": {"@source": "node956128", "@target": "node956130"}}, "node956135": {"edge956136": {"@source": "node956135", "@target": "node956136"}, "edge956137": {"@source": "node956135", "@target": "node956137"}}, "node956141": {"edge956142": {"@source": "node956141", "@target": "node956142"}, "edge956143": {"@source": "node956141", "@target": "node956143"}}, "node956143": {"edge956144": {"@source": "node956143", "@target": "node956144"}, "edge956151": {"@source": "node956143", "@target": "node956151"}}, "node956144": {"edge956145": {"@source": "node956144", "@target": "node956145"}, "edge956150": {"@source": "node956144", "@target": "node956150"}}, "node956145": {"edge956146": {"@source": "node956145", "@target": "node956146"}, "edge956149": {"@source": "node956145", "@target": "node956149"}}, "node956146": {"edge956147": {"@source": "node956146", "@target": "node956147"}, "edge956148": {"@source": "node956146", "@target": "node956148"}}, "node956152": {"edge956153": {"@source": "node956152", "@target": "node956153"}, "edge956154": {"@source": "node956152", "@target": "node956154"}}, "node956155": {"edge956156": {"@source": "node956155", "@target": "node956156"}, "edge956173": {"@source": "node956155", "@target": "node956173"}}, "node956156": {"edge956157": {"@source": "node956156", "@target": "node956157"}, "edge956172": {"@source": "node956156", "@target": "node956172"}}, "node956157": {"edge956158": {"@source": "node956157", "@target": "node956158"}, "edge956171": {"@source": "node956157", "@target": "node956171"}}, "node956158": {"edge956159": {"@source": "node956158", "@target": "node956159"}, "edge956170": {"@source": "node956158", "@target": "node956170"}}, "node956159": {"edge956160": {"@source": "node956159", "@target": "node956160"}, "edge956169": {"@source": "node956159", "@target": "node956169"}}, "node956160": {"edge956161": {"@source": "node956160", "@target": "node956161"}, "edge956168": {"@source": "node956160", "@target": "node956168"}}, "node956161": {"edge956162": {"@source": "node956161", "@target": "node956162"}, "edge956163": {"@source": "node956161", "@target": "node956163"}}, "node956163": {"edge956164": {"@source": "node956163", "@target": "node956164"}, "edge956165": {"@source": "node956163", "@target": "node956165"}}, "node956165": {"edge956166": {"@source": "node956165", "@target": "node956166"}, "edge956167": {"@source": "node956165", "@target": "node956167"}}}, "nodeById": {"node956057": {"@root": true}, "node956058": {}, "node956059": {}, "node956060": {"@otu": "otu160463"}, "node956061": {"@otu": "otu160461"}, "node956062": {}, "node956063": {"@otu": "otu160468"}, "node956064": {}, "node956065": {}, "node956066": {}, "node956067": {}, "node956068": {}, "node956069": {"@otu": "otu160499"}, "node956070": {"@otu": "otu160452"}, "node956071": {"@otu": "otu160485"}, "node956072": {"@otu": "otu160490"}, "node956073": {"@otu": "otu160470"}, "node956074": {}, "node956075": {"@otu": "otu160477"}, "node956076": {}, "node956077": {}, "node956078": {"@otu": "otu160456"}, "node956079": {}, "node956080": {"@otu": "otu160478"}, "node956081": {}, "node956082": {}, "node956083": {"@otu": "otu160455"}, "node956084": {}, "node956085": {}, "node956086": {}, "node956087": {"@otu": "otu160449"}, "node956088": {}, "node956089": {"@otu": "otu160451"}, "node956090": {"@otu": "otu160496"}, "node956091": {"@otu": "otu160453"}, "node956092": {"@otu": "otu160457"}, "node956093": {"@otu": "otu160447"}, "node956094": {"@otu": "otu160487"}, "node956095": {}, "node956096": {}, "node956097": {}, "node956098": {"@otu": "otu160465"}, "node956099": {"@otu": "otu160454"}, "node956100": {}, "node956101": {}, "node956102": {}, "node956103": {}, "node956104": {}, "node956105": {}, "node956106": {}, "node956107": {}, "node956108": {}, "node956109": {}, "node956110": {}, "node956111": {"@otu": "otu160444"}, "node956112": {}, "node956113": {}, "node956114": {}, "node956115": {}, "node956116": {"@otu": "otu160488"}, "node956117": {}, "node956118": {}, "node956119": {}, "node956120": {"@otu": "otu160464"}, "node956121": {"@otu": "otu160484"}, "node956122": {"@otu": "otu160458"}, "node956123": {"@otu": "otu160497"}, "node956124": {"@otu": "otu160450"}, "node956125": {}, "node956126": {"@otu": "otu160459"}, "node956127": {"@otu": "otu160480"}, "node956128": {}, "node956129": {"@otu": "otu160495"}, "node956130": {"@otu": "otu160442"}, "node956131": {"@otu": "otu160472"}, "node956132": {"@otu": "otu160462"}, "node956133": {"@otu": "otu160498"}, "node956134": {"@otu": "otu160473"}, "node956135": {}, "node956136": {"@otu": "otu160491"}, "node956137": {"@otu": "otu160471"}, "node956138": {"@otu": "otu160446"}, "node956139": {"@otu": "otu160460"}, "node956140": {"@otu": "otu160486"}, "node956141": {}, "node956142": {"@otu": "otu160445"}, "node956143": {}, "node956144": {}, "node956145": {}, "node956146": {}, "node956147": {"@otu": "otu160476"}, "node956148": {"@otu": "otu160493"}, "node956149": {"@otu": "otu160494"}, "node956150": {"@otu": "otu160482"}, "node956151": {"@otu": "otu160483"}, "node956152": {}, "node956153": {"@otu": "otu160474"}, "node956154": {"@otu": "otu160492"}, "node956155": {}, "node956156": {}, "node956157": {}, "node956158": {}, "node956159": {}, "node956160": {}, "node956161": {}, "node956162": {"@otu": "otu160448"}, "node956163": {}, "node956164": {"@otu": "otu160481"}, "node956165": {}, "node956166": {"@otu": "otu160443"}, "node956167": {"@otu": "otu160469"}, "node956168": {"@otu": "otu160475"}, "node956169": {"@otu": "otu160500"}, "node956170": {"@otu": "otu160466"}, "node956171": {"@otu": "otu160479"}, "node956172": {"@otu": "otu160467"}, "node956173": {"@otu": "otu160489"}}}, "tree569": {"@label": "Untitled (tree569)", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "NJ, ITS", "^ot:inGroupClade": "", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node314441", "^ot:specifiedRoot": "", "^ot:tag": [], "^ot:unrootedTree": true, "edgeBySourceId": {"node314441": {"edge314442": {"@source": "node314441", "@target": "node314442"}, "edge314443": {"@source": "node314441", "@target": "node314443"}}, "node314443": {"edge314444": {"@source": "node314443", "@target": "node314444"}, "edge314461": {"@source": "node314443", "@target": "node314461"}}, "node314444": {"edge314445": {"@source": "node314444", "@target": "node314445"}, "edge314446": {"@source": "node314444", "@target": "node314446"}}, "node314446": {"edge314447": {"@source": "node314446", "@target": "node314447"}, "edge314448": {"@source": "node314446", "@target": "node314448"}}, "node314448": {"edge314449": {"@source": "node314448", "@target": "node314449"}, "edge314460": {"@source": "node314448", "@target": "node314460"}}, "node314449": {"edge314450": {"@source": "node314449", "@target": "node314450"}, "edge314451": {"@source": "node314449", "@target": "node314451"}}, "node314451": {"edge314452": {"@source": "node314451", "@target": "node314452"}, "edge314459": {"@source": "node314451", "@target": "node314459"}}, "node314452": {"edge314453": {"@source": "node314452", "@target": "node314453"}, "edge314458": {"@source": "node314452", "@target": "node314458"}}, "node314453": {"edge314454": {"@source": "node314453", "@target": "node314454"}, "edge314455": {"@source": "node314453", "@target": "node314455"}}, "node314455": {"edge314456": {"@source": "node314455", "@target": "node314456"}, "edge314457": {"@source": "node314455", "@target": "node314457"}}, "node314461": {"edge314462": {"@source": "node314461", "@target": "node314462"}, "edge314557": {"@source": "node314461", "@target": "node314557"}}, "node314462": {"edge314463": {"@source": "node314462", "@target": "node314463"}, "edge314548": {"@source": "node314462", "@target": "node314548"}}, "node314463": {"edge314464": {"@source": "node314463", "@target": "node314464"}, "edge314547": {"@source": "node314463", "@target": "node314547"}}, "node314464": {"edge314465": {"@source": "node314464", "@target": "node314465"}, "edge314468": {"@source": "node314464", "@target": "node314468"}}, "node314465": {"edge314466": {"@source": "node314465", "@target": "node314466"}, "edge314467": {"@source": "node314465", "@target": "node314467"}}, "node314468": {"edge314469": {"@source": "node314468", "@target": "node314469"}, "edge314528": {"@source": "node314468", "@target": "node314528"}}, "node314469": {"edge314470": {"@source": "node314469", "@target": "node314470"}, "edge314473": {"@source": "node314469", "@target": "node314473"}}, "node314470": {"edge314471": {"@source": "node314470", "@target": "node314471"}, "edge314472": {"@source": "node314470", "@target": "node314472"}}, "node314473": {"edge314474": {"@source": "node314473", "@target": "node314474"}, "edge314525": {"@source": "node314473", "@target": "node314525"}}, "node314474": {"edge314475": {"@source": "node314474", "@target": "node314475"}, "edge314514": {"@source": "node314474", "@target": "node314514"}}, "node314475": {"edge314476": {"@source": "node314475", "@target": "node314476"}, "edge314513": {"@source": "node314475", "@target": "node314513"}}, "node314476": {"edge314477": {"@source": "node314476", "@target": "node314477"}, "edge314512": {"@source": "node314476", "@target": "node314512"}}, "node314477": {"edge314478": {"@source": "node314477", "@target": "node314478"}, "edge314511": {"@source": "node314477", "@target": "node314511"}}, "node314478": {"edge314479": {"@source": "node314478", "@target": "node314479"}, "edge314508": {"@source": "node314478", "@target": "node314508"}}, "node314479": {"edge314480": {"@source": "node314479", "@target": "node314480"}, "edge314507": {"@source": "node314479", "@target": "node314507"}}, "node314480": {"edge314481": {"@source": "node314480", "@target": "node314481"}, "edge314506": {"@source": "node314480", "@target": "node314506"}}, "node314481": {"edge314482": {"@source": "node314481", "@target": "node314482"}, "edge314505": {"@source": "node314481", "@target": "node314505"}}, "node314482": {"edge314483": {"@source": "node314482", "@target": "node314483"}, "edge314504": {"@source": "node314482", "@target": "node314504"}}, "node314483": {"edge314484": {"@source": "node314483", "@target": "node314484"}, "edge314485": {"@source": "node314483", "@target": "node314485"}}, "node314485": {"edge314486": {"@source": "node314485", "@target": "node314486"}, "edge314501": {"@source": "node314485", "@target": "node314501"}}, "node314486": {"edge314487": {"@source": "node314486", "@target": "node314487"}, "edge314498": {"@source": "node314486", "@target": "node314498"}}, "node314487": {"edge314488": {"@source": "node314487", "@target": "node314488"}, "edge314497": {"@source": "node314487", "@target": "node314497"}}, "node314488": {"edge314489": {"@source": "node314488", "@target": "node314489"}, "edge314490": {"@source": "node314488", "@target": "node314490"}}, "node314490": {"edge314491": {"@source": "node314490", "@target": "node314491"}, "edge314496": {"@source": "node314490", "@target": "node314496"}}, "node314491": {"edge314492": {"@source": "node314491", "@target": "node314492"}, "edge314495": {"@source": "node314491", "@target": "node314495"}}, "node314492": {"edge314493": {"@source": "node314492", "@target": "node314493"}, "edge314494": {"@source": "node314492", "@target": "node314494"}}, "node314498": {"edge314499": {"@source": "node314498", "@target": "node314499"}, "edge314500": {"@source": "node314498", "@target": "node314500"}}, "node314501": {"edge314502": {"@source": "node314501", "@target": "node314502"}, "edge314503": {"@source": "node314501", "@target": "node314503"}}, "node314508": {"edge314509": {"@source": "node314508", "@target": "node314509"}, "edge314510": {"@source": "node314508", "@target": "node314510"}}, "node314514": {"edge314515": {"@source": "node314514", "@target": "node314515"}, "edge314516": {"@source": "node314514", "@target": "node314516"}}, "node314516": {"edge314517": {"@source": "node314516", "@target": "node314517"}, "edge314524": {"@source": "node314516", "@target": "node314524"}}, "node314517": {"edge314518": {"@source": "node314517", "@target": "node314518"}, "edge314523": {"@source": "node314517", "@target": "node314523"}}, "node314518": {"edge314519": {"@source": "node314518", "@target": "node314519"}, "edge314522": {"@source": "node314518", "@target": "node314522"}}, "node314519": {"edge314520": {"@source": "node314519", "@target": "node314520"}, "edge314521": {"@source": "node314519", "@target": "node314521"}}, "node314525": {"edge314526": {"@source": "node314525", "@target": "node314526"}, "edge314527": {"@source": "node314525", "@target": "node314527"}}, "node314528": {"edge314529": {"@source": "node314528", "@target": "node314529"}, "edge314546": {"@source": "node314528", "@target": "node314546"}}, "node314529": {"edge314530": {"@source": "node314529", "@target": "node314530"}, "edge314545": {"@source": "node314529", "@target": "node314545"}}, "node314530": {"edge314531": {"@source": "node314530", "@target": "node314531"}, "edge314544": {"@source": "node314530", "@target": "node314544"}}, "node314531": {"edge314532": {"@source": "node314531", "@target": "node314532"}, "edge314543": {"@source": "node314531", "@target": "node314543"}}, "node314532": {"edge314533": {"@source": "node314532", "@target": "node314533"}, "edge314542": {"@source": "node314532", "@target": "node314542"}}, "node314533": {"edge314534": {"@source": "node314533", "@target": "node314534"}, "edge314541": {"@source": "node314533", "@target": "node314541"}}, "node314534": {"edge314535": {"@source": "node314534", "@target": "node314535"}, "edge314536": {"@source": "node314534", "@target": "node314536"}}, "node314536": {"edge314537": {"@source": "node314536", "@target": "node314537"}, "edge314538": {"@source": "node314536", "@target": "node314538"}}, "node314538": {"edge314539": {"@source": "node314538", "@target": "node314539"}, "edge314540": {"@source": "node314538", "@target": "node314540"}}, "node314548": {"edge314549": {"@source": "node314548", "@target": "node314549"}, "edge314556": {"@source": "node314548", "@target": "node314556"}}, "node314549": {"edge314550": {"@source": "node314549", "@target": "node314550"}, "edge314555": {"@source": "node314549", "@target": "node314555"}}, "node314550": {"edge314551": {"@source": "node314550", "@target": "node314551"}, "edge314554": {"@source": "node314550", "@target": "node314554"}}, "node314551": {"edge314552": {"@source": "node314551", "@target": "node314552"}, "edge314553": {"@source": "node314551", "@target": "node314553"}}}, "nodeById": {"node314441": {"@root": true}, "node314442": {"@otu": "otu160487"}, "node314443": {}, "node314444": {}, "node314445": {"@otu": "otu160456"}, "node314446": {}, "node314447": {"@otu": "otu160478"}, "node314448": {}, "node314449": {}, "node314450": {"@otu": "otu160455"}, "node314451": {}, "node314452": {}, "node314453": {}, "node314454": {"@otu": "otu160449"}, "node314455": {}, "node314456": {"@otu": "otu160451"}, "node314457": {"@otu": "otu160496"}, "node314458": {"@otu": "otu160453"}, "node314459": {"@otu": "otu160457"}, "node314460": {"@otu": "otu160447"}, "node314461": {}, "node314462": {}, "node314463": {}, "node314464": {}, "node314465": {}, "node314466": {"@otu": "otu160463"}, "node314467": {"@otu": "otu160461"}, "node314468": {}, "node314469": {}, "node314470": {}, "node314471": {"@otu": "otu160465"}, "node314472": {"@otu": "otu160454"}, "node314473": {}, "node314474": {}, "node314475": {}, "node314476": {}, "node314477": {}, "node314478": {}, "node314479": {}, "node314480": {}, "node314481": {}, "node314482": {}, "node314483": {}, "node314484": {"@otu": "otu160444"}, "node314485": {}, "node314486": {}, "node314487": {}, "node314488": {}, "node314489": {"@otu": "otu160488"}, "node314490": {}, "node314491": {}, "node314492": {}, "node314493": {"@otu": "otu160464"}, "node314494": {"@otu": "otu160484"}, "node314495": {"@otu": "otu160458"}, "node314496": {"@otu": "otu160497"}, "node314497": {"@otu": "otu160450"}, "node314498": {}, "node314499": {"@otu": "otu160459"}, "node314500": {"@otu": "otu160480"}, "node314501": {}, "node314502": {"@otu": "otu160495"}, "node314503": {"@otu": "otu160442"}, "node314504": {"@otu": "otu160472"}, "node314505": {"@otu": "otu160462"}, "node314506": {"@otu": "otu160498"}, "node314507": {"@otu": "otu160473"}, "node314508": {}, "node314509": {"@otu": "otu160491"}, "node314510": {"@otu": "otu160471"}, "node314511": {"@otu": "otu160446"}, "node314512": {"@otu": "otu160460"}, "node314513": {"@otu": "otu160486"}, "node314514": {}, "node314515": {"@otu": "otu160445"}, "node314516": {}, "node314517": {}, "node314518": {}, "node314519": {}, "node314520": {"@otu": "otu160476"}, "node314521": {"@otu": "otu160493"}, "node314522": {"@otu": "otu160494"}, "node314523": {"@otu": "otu160482"}, "node314524": {"@otu": "otu160483"}, "node314525": {}, "node314526": {"@otu": "otu160474"}, "node314527": {"@otu": "otu160492"}, "node314528": {}, "node314529": {}, "node314530": {}, "node314531": {}, "node314532": {}, "node314533": {}, "node314534": {}, "node314535": {"@otu": "otu160448"}, "node314536": {}, "node314537": {"@otu": "otu160481"}, "node314538": {}, "node314539": {"@otu": "otu160443"}, "node314540": {"@otu": "otu160469"}, "node314541": {"@otu": "otu160475"}, "node314542": {"@otu": "otu160500"}, "node314543": {"@otu": "otu160466"}, "node314544": {"@otu": "otu160479"}, "node314545": {"@otu": "otu160467"}, "node314546": {"@otu": "otu160489"}, "node314547": {"@otu": "otu160468"}, "node314548": {}, "node314549": {}, "node314550": {}, "node314551": {}, "node314552": {"@otu": "otu160499"}, "node314553": {"@otu": "otu160452"}, "node314554": {"@otu": "otu160485"}, "node314555": {"@otu": "otu160490"}, "node314556": {"@otu": "otu160470"}, "node314557": {"@otu": "otu160477"}}}}}}}}, "branch2sha": {"master": "1bbbe21bdd9a32ef81abeb3f038a977fdc0e8e7b"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "a2d902a81fece9a03f3e318be776e611413fdf82", "author_name": "Karen Cranston", "author_email": "ANONYMOUS", "date": "Wed, 28 Jan 2015 16:54:53 +0000", "date_ISO_8601": "2015-01-28 16:54:53 +0000", "relative_date": "12 years ago", "message_subject": "Changed date to match publication", "message_body": "(Update Study #pg_448 via OpenTree API)"}, {"id": "a6f8cb2268819fbbdd81a9beac68ea11566f0187", "author_name": "Jonathan A Rees", "author_email": "jar398@mumble.net", "date": "Tue, 7 Oct 2014 12:30:58 +0000", "date_ISO_8601": "2014-10-07 12:30:58 +0000", "relative_date": "12 years ago", "message_subject": "Looked up DOI", "message_body": "(Update Study #pg_448 via OpenTree API)"}, {"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}