{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2015-09-28T17:13:47.877Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "All life"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}, {"@active": true, "@valid": true, "new": {"$": "$1"}, "old": {"$": "^(\\S*\\s+\\S*).*"}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2015-09-28T17:13:47.877Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316652", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316652"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316653", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316653"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316657", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316657"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316658", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316658"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316660", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316660"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316661", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316661"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316662", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316662"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316663", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316663"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316664", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316664"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316665", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316665"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316667", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316667"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316668", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316668"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316670", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316670"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316671", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316671"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316673", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316673"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316674", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316674"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316675", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316675"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316676", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316676"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316680", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316680"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316681", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316681"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316684", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316684"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316685", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316685"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316686", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316686"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316687", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316687"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316689", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316689"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316690", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316690"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316694", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316694"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316695", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316695"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316696", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316696"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316697", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316697"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316713", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316713"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316714", "@treesID": "trees463", "@treeID": "tree604", "@nodeID": "node316714"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316729", "@treesID": "trees463", "@treeID": "tree605", "@nodeID": "node316729"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316730", "@treesID": "trees463", "@treeID": "tree605", "@nodeID": "node316730"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316735", "@treesID": "trees463", "@treeID": "tree605", "@nodeID": "node316735"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316736", "@treesID": "trees463", "@treeID": "tree605", "@nodeID": "node316736"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316741", "@treesID": "trees463", "@treeID": "tree605", "@nodeID": "node316741"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316742", "@treesID": "trees463", "@treeID": "tree605", "@nodeID": "node316742"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316761", "@treesID": "trees463", "@treeID": "tree605", "@nodeID": "node316761"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316762", "@treesID": "trees463", "@treeID": "tree605", "@nodeID": "node316762"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316815", "@treesID": "trees463", "@treeID": "tree605", "@nodeID": "node316815"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:isTaxonExemplar"], "refersTo": {"@top": "trees", "@idref": "node316816", "@treesID": "trees463", "@treeID": "tree605", "@nodeID": "node316816"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161353", "otu161355", "otu161439"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161354", "otu161421"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161356", "otu161363", "otu161364", "otu161367", "otu161375", "otu161376", "otu161381", "otu161382"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161357", "otu161360", "otu161362", "otu161366", "otu161368", "otu161369", "otu161371", "otu161374"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161357", "otu161360", "otu161362", "otu161366", "otu161368", "otu161369", "otu161371", "otu161374", "otu161393", "otu161402", "otu161411", "otu161419"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161358", "otu161359", "otu161361", "otu161379"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161358", "otu161359", "otu161361", "otu161379", "otu161383", "otu161385", "otu161386", "otu161391", "otu161410", "otu161412", "otu161414", "otu161416"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161365", "otu161370", "otu161373", "otu161378"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161380", "otu161427"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161384", "otu161397"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161387", "otu161395", "otu161396", "otu161401"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161388", "otu161407", "otu161413"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161389", "otu161390", "otu161392", "otu161399", "otu161400", "otu161404", "otu161408", "otu161409", "otu161418"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161394", "otu161398", "otu161403"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161406", "otu161417"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161420", "otu161422", "otu161423", "otu161424", "otu161431", "otu161436", "otu161443"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161425", "otu161433"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161426", "otu161435"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161427", "otu161442"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161428", "otu161432"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161428", "otu161432", "otu161440"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161429", "otu161437"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161430", "otu161438"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "MULTIPLE_TIPS_MAPPED_TO_OTT_ID", "data": ["otu161439", "otu161441"], "refersTo": {"@top": "otus", "@idref": "otus463", "@otusID": "otus463"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree604", "@treesID": "trees463", "@treeID": "tree604"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree605", "@treesID": "trees463", "@treeID": "tree605"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree604"], "^ot:comment": "", "^ot:curatorName": ["Romina Gazis"], "^ot:dataDeposit": {"@href": "http://purl.org/phylo/treebase/phylows/study/TB2:S1831"}, "^ot:focalClade": 741639, "^ot:focalCladeOTTTaxonName": "Neotyphodium", "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["otus463"], "^ot:studyId": "pg_463", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.3852/mycologia.97.4.804"}, "^ot:studyPublicationReference": "Moon, Christina D., Jean-Jacques Guillaumin, Catherine Ravel, Chunjie Li, Kelly D. Craven, and Christopher L. Schardl. \"New Neotyphodium endophyte species from the grass tribes Stipeae and Meliceae.\" Mycologia 99, no. 6 (2007): 895-905", "^ot:studyYear": 2007, "^ot:tag": [], "^ot:treesElementOrder": ["trees463"], "^xhtml:license": {"@href": "http://creativecommons.org/publicdomain/zero/1.0/", "@name": "CC0"}, "otusById": {"otus463": {"otuById": {"otu161353": {"^ot:originalLabel": "Epichloe bromicola 200750", "^ot:ottId": 905106, "^ot:ottTaxonName": "Epichloe bromicola", "^ot:treebaseOTUId": "Tl23960"}, "otu161354": {"^ot:originalLabel": "Epichloe sylvatica 200751", "^ot:ottId": 380242, "^ot:ottTaxonName": "Epichloe sylvatica", "^ot:treebaseOTUId": "Tl23964"}, "otu161355": {"^ot:originalLabel": "Epichloe bromicola 201558", "^ot:ottId": 905106, "^ot:ottTaxonName": "Epichloe bromicola", "^ot:treebaseOTUId": "Tl23970"}, "otu161356": {"^ot:originalLabel": "Neotyphodium funkii 4100 copy a", "^ot:ottId": 221699, "^ot:ottTaxonName": "Neotyphodium funkii", "^ot:treebaseOTUId": "Tl50459"}, "otu161357": {"^ot:originalLabel": "Neotyphodium gansuense E7083", "^ot:ottId": 221696, "^ot:ottTaxonName": "Neotyphodium gansuense", "^ot:treebaseOTUId": "Tl50460"}, "otu161358": {"^ot:originalLabel": "Neotyphodium guerinii MYA 1236 copy b", "^ot:ottId": 221702, "^ot:ottTaxonName": "Neotyphodium guerinii", "^ot:treebaseOTUId": "Tl50461"}, "otu161359": {"^ot:originalLabel": "Neotyphodium guerinii MYA 1235 copy a", "^ot:ottId": 221702, "^ot:ottTaxonName": "Neotyphodium guerinii", "^ot:treebaseOTUId": "Tl50462"}, "otu161360": {"^ot:originalLabel": "Neotyphodium gansuense MYA 3669", "^ot:ottId": 221696, "^ot:ottTaxonName": "Neotyphodium gansuense", "^ot:treebaseOTUId": "Tl50463"}, "otu161361": {"^ot:originalLabel": "Neotyphodium guerinii MYA 1236 copy a", "^ot:ottId": 221702, "^ot:ottTaxonName": "Neotyphodium guerinii", "^ot:treebaseOTUId": "Tl50464"}, "otu161362": {"^ot:originalLabel": "Neotyphodium gansuense var. inebrians MYA 1228", "^ot:ottId": 221696, "^ot:ottTaxonName": "Neotyphodium gansuense", "^ot:treebaseOTUId": "Tl50465"}, "otu161363": {"^ot:originalLabel": "Neotyphodium funkii MYA 2583 copy a", "^ot:ottId": 221699, "^ot:ottTaxonName": "Neotyphodium funkii", "^ot:treebaseOTUId": "Tl50466"}, "otu161364": {"^ot:originalLabel": "Neotyphodium funkii MYA 2583 copy b", "^ot:ottId": 221699, "^ot:ottTaxonName": "Neotyphodium funkii", "^ot:treebaseOTUId": "Tl50467"}, "otu161365": {"^ot:originalLabel": "Neotyphodium melicicola MYA 1188 copy a", "^ot:ottId": 228152, "^ot:ottTaxonName": "Neotyphodium melicicola", "^ot:treebaseOTUId": "Tl50468"}, "otu161366": {"^ot:originalLabel": "Neotyphodium gansuense E7084", "^ot:ottId": 221696, "^ot:ottTaxonName": "Neotyphodium gansuense", "^ot:treebaseOTUId": "Tl50469"}, "otu161367": {"^ot:originalLabel": "Neotyphodium funkii 4099 copy a", "^ot:ottId": 221699, "^ot:ottTaxonName": "Neotyphodium funkii", "^ot:treebaseOTUId": "Tl50470"}, "otu161368": {"^ot:originalLabel": "Neotyphodium gansuense E7080", "^ot:ottId": 221696, "^ot:ottTaxonName": "Neotyphodium gansuense", "^ot:treebaseOTUId": "Tl50471"}, "otu161369": {"^ot:originalLabel": "Neotyphodium gansuense E7088", "^ot:ottId": 221696, "^ot:ottTaxonName": "Neotyphodium gansuense", "^ot:treebaseOTUId": "Tl50472"}, "otu161370": {"^ot:originalLabel": "Neotyphodium melicicola MYA 1190 copy a", "^ot:ottId": 228152, "^ot:ottTaxonName": "Neotyphodium melicicola", "^ot:treebaseOTUId": "Tl50473"}, "otu161371": {"^ot:originalLabel": "Neotyphodium gansuense E7092", "^ot:ottId": 221696, "^ot:ottTaxonName": "Neotyphodium gansuense", "^ot:treebaseOTUId": "Tl50474"}, "otu161372": {"^ot:originalLabel": "Neotyphodium chisosum 64037", "^ot:ottId": 852057, "^ot:ottTaxonName": "Neotyphodium chisosum", "^ot:treebaseOTUId": "Tl50475"}, "otu161373": {"^ot:originalLabel": "Neotyphodium melicicola MYA 1190 copy b", "^ot:ottId": 228152, "^ot:ottTaxonName": "Neotyphodium melicicola", "^ot:treebaseOTUId": "Tl50476"}, "otu161374": {"^ot:originalLabel": "Neotyphodium gansuense var. inebrians MYA 1187", "^ot:ottId": 221696, "^ot:ottTaxonName": "Neotyphodium gansuense", "^ot:treebaseOTUId": "Tl50477"}, "otu161375": {"^ot:originalLabel": "Neotyphodium funkii 4098 copy a", "^ot:ottId": 221699, "^ot:ottTaxonName": "Neotyphodium funkii", "^ot:treebaseOTUId": "Tl50478"}, "otu161376": {"^ot:originalLabel": "Neotyphodium funkii E4099 copy b", "^ot:ottId": 221699, "^ot:ottTaxonName": "Neotyphodium funkii", "^ot:treebaseOTUId": "Tl50479"}, "otu161377": {"^ot:originalLabel": "Neotyphodium aotearoae MYA 1192", "^ot:ottId": 177218, "^ot:ottTaxonName": "Neotyphodium aotearoae", "^ot:treebaseOTUId": "Tl50480"}, "otu161378": {"^ot:originalLabel": "Neotyphodium melicicola MYA 1188 copy b", "^ot:ottId": 228152, "^ot:ottTaxonName": "Neotyphodium melicicola", "^ot:treebaseOTUId": "Tl50481"}, "otu161379": {"^ot:originalLabel": "Neotyphodium guerinii MYA 1235 copy b", "^ot:ottId": 221702, "^ot:ottTaxonName": "Neotyphodium guerinii", "^ot:treebaseOTUId": "Tl50482"}, "otu161380": {"^ot:originalLabel": "Epichloe festucae E28", "^ot:ottId": 137209, "^ot:ottTaxonName": "Epichloe festucae", "^ot:treebaseOTUId": "Tl50483"}, "otu161381": {"^ot:originalLabel": "Neotyphodium funkii E4100 copy b", "^ot:ottId": 221699, "^ot:ottTaxonName": "Neotyphodium funkii", "^ot:treebaseOTUId": "Tl50484"}, "otu161382": {"^ot:originalLabel": "Neotyphodium funkii E4098 copy b", "^ot:ottId": 221699, "^ot:ottTaxonName": "Neotyphodium funkii", "^ot:treebaseOTUId": "Tl50485"}, "otu161383": {"^ot:originalLabel": "Neotyphodium guerinii CBS112036 copy a", "^ot:ottId": 221702, "^ot:ottTaxonName": "Neotyphodium guerinii", "^ot:treebaseOTUId": "Tl50486"}, "otu161384": {"^ot:originalLabel": "Neotyphodium funkii copy b", "^ot:ottId": 221699, "^ot:ottTaxonName": "Neotyphodium funkii", "^ot:treebaseOTUId": "Tl50487"}, "otu161385": {"^ot:originalLabel": "Neotyphodium guerinii CBS113029 copy b", "^ot:ottId": 221702, "^ot:ottTaxonName": "Neotyphodium guerinii", "^ot:treebaseOTUId": "Tl50488"}, "otu161386": {"^ot:originalLabel": "Neotyphodium guerinii A28 copy a", "^ot:ottId": 221702, "^ot:ottTaxonName": "Neotyphodium guerinii", "^ot:treebaseOTUId": "Tl50489"}, "otu161387": {"^ot:originalLabel": "Neotyphodium tembladerae Ms803 copy b", "^ot:ottId": 590981, "^ot:ottTaxonName": "Neotyphodium tembladerae", "^ot:treebaseOTUId": "Tl50490"}, "otu161388": {"^ot:originalLabel": "Neotyphodium coenophialum 90664 copy b", "^ot:ottId": 400304, "^ot:ottTaxonName": "Neotyphodium coenophialum", "^ot:treebaseOTUId": "Tl50491"}, "otu161389": {"^ot:originalLabel": "Epichloe typina 201666", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl50492"}, "otu161390": {"^ot:originalLabel": "Epichloe typina E5303", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl50493"}, "otu161391": {"^ot:originalLabel": "Neotyphodium guerinii CBS112036 copy b", "^ot:ottId": 221702, "^ot:ottTaxonName": "Neotyphodium guerinii", "^ot:treebaseOTUId": "Tl50494"}, "otu161392": {"^ot:originalLabel": "Epichloe typina 200736", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl50495"}, "otu161393": {"^ot:originalLabel": "Neotyphodium gansuense E7086", "^ot:ottId": 221696, "^ot:ottTaxonName": "Neotyphodium gansuense", "^ot:treebaseOTUId": "Tl50496"}, "otu161394": {"^ot:originalLabel": "Neotyphodium chisosum 64037 copy a", "^ot:ottId": 852057, "^ot:ottTaxonName": "Neotyphodium chisosum", "^ot:treebaseOTUId": "Tl50497"}, "otu161395": {"^ot:originalLabel": "Neotyphodium tembladerae MYA 2564 copy b", "^ot:ottId": 590981, "^ot:ottTaxonName": "Neotyphodium tembladerae", "^ot:treebaseOTUId": "Tl50498"}, "otu161396": {"^ot:originalLabel": "Neotyphodium tembladerae MYA 2564 copy a", "^ot:ottId": 590981, "^ot:ottTaxonName": "Neotyphodium tembladerae", "^ot:treebaseOTUId": "Tl50499"}, "otu161397": {"^ot:originalLabel": "Neotyphodium funkii copy a", "^ot:ottId": 221699, "^ot:ottTaxonName": "Neotyphodium funkii", "^ot:treebaseOTUId": "Tl50500"}, "otu161398": {"^ot:originalLabel": "Neotyphodium chisosum 64037 copy c", "^ot:ottId": 852057, "^ot:ottTaxonName": "Neotyphodium chisosum", "^ot:treebaseOTUId": "Tl50501"}, "otu161399": {"^ot:originalLabel": "Epichloe typina 200739", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl50502"}, "otu161400": {"^ot:originalLabel": "Epichloe typina 200740", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl50503"}, "otu161401": {"^ot:originalLabel": "Neotyphodium tembladerae Ms803 copy a", "^ot:ottId": 590981, "^ot:ottTaxonName": "Neotyphodium tembladerae", "^ot:treebaseOTUId": "Tl50504"}, "otu161402": {"^ot:originalLabel": "Neotyphodium gansuense E7090", "^ot:ottId": 221696, "^ot:ottTaxonName": "Neotyphodium gansuense", "^ot:treebaseOTUId": "Tl50505"}, "otu161403": {"^ot:originalLabel": "Neotyphodium chisosum 64037 copy b", "^ot:ottId": 852057, "^ot:ottTaxonName": "Neotyphodium chisosum", "^ot:treebaseOTUId": "Tl50506"}, "otu161404": {"^ot:originalLabel": "Epichloe typina 200738", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl50507"}, "otu161405": {"^ot:originalLabel": "Epichloe sp. E9924", "^ot:ottId": 908827, "^ot:ottTaxonName": "Epichloe", "^ot:treebaseOTUId": "Tl50508"}, "otu161406": {"^ot:originalLabel": "Neotyphodium occultans Lrr1 copy b", "^ot:ottId": 3700472, "^ot:ottTaxonName": "Neotyphodium occultans", "^ot:treebaseOTUId": "Tl50509"}, "otu161407": {"^ot:originalLabel": "Neotyphodium coenophialum 90664 copy c", "^ot:ottId": 400304, "^ot:ottTaxonName": "Neotyphodium coenophialum", "^ot:treebaseOTUId": "Tl50510"}, "otu161408": {"^ot:originalLabel": "Epichloe typina 201667", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl50511"}, "otu161409": {"^ot:originalLabel": "Epichloe typina E1158", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl50512"}, "otu161410": {"^ot:originalLabel": "Neotyphodium guerinii CBS112035 copy b", "^ot:ottId": 221702, "^ot:ottTaxonName": "Neotyphodium guerinii", "^ot:treebaseOTUId": "Tl50513"}, "otu161411": {"^ot:originalLabel": "Neotyphodium gansuense E7082", "^ot:ottId": 221696, "^ot:ottTaxonName": "Neotyphodium gansuense", "^ot:treebaseOTUId": "Tl50514"}, "otu161412": {"^ot:originalLabel": "Neotyphodium guerinii A28 copy b", "^ot:ottId": 221702, "^ot:ottTaxonName": "Neotyphodium guerinii", "^ot:treebaseOTUId": "Tl50515"}, "otu161413": {"^ot:originalLabel": "Neotyphodium coenophialum 90664 copy a", "^ot:ottId": 400304, "^ot:ottTaxonName": "Neotyphodium coenophialum", "^ot:treebaseOTUId": "Tl50516"}, "otu161414": {"^ot:originalLabel": "Neotyphodium guerinii CBS112035 copy a", "^ot:ottId": 221702, "^ot:ottTaxonName": "Neotyphodium guerinii", "^ot:treebaseOTUId": "Tl50517"}, "otu161415": {"^ot:originalLabel": "Neotyphodium sp. DQ675589", "^ot:ottId": 3652605, "^ot:ottTaxonName": "Neothyonidium", "^ot:treebaseOTUId": "Tl50518"}, "otu161416": {"^ot:originalLabel": "Neotyphodium guerinii CBS113029 copy a", "^ot:ottId": 221702, "^ot:ottTaxonName": "Neotyphodium guerinii", "^ot:treebaseOTUId": "Tl50519"}, "otu161417": {"^ot:originalLabel": "Neotyphodium occultans Lrr1 copy a", "^ot:ottId": 3700472, "^ot:ottTaxonName": "Neotyphodium occultans", "^ot:treebaseOTUId": "Tl50520"}, "otu161418": {"^ot:originalLabel": "Epichloe typina 201669", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl50521"}, "otu161419": {"^ot:originalLabel": "Neotyphodium gansuense E7087", "^ot:ottId": 221696, "^ot:ottTaxonName": "Neotyphodium gansuense", "^ot:treebaseOTUId": "Tl50522"}, "otu161420": {"^ot:originalLabel": "Epichloe typhina 200739", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl621"}, "otu161421": {"^ot:originalLabel": "Epichloe sylvatica 200748", "^ot:ottId": 380242, "^ot:ottTaxonName": "Epichloe sylvatica", "^ot:treebaseOTUId": "Tl622"}, "otu161422": {"^ot:originalLabel": "Epichloe typhina 200736", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl623"}, "otu161423": {"^ot:originalLabel": "Epichloe typhina 201668", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl624"}, "otu161424": {"^ot:originalLabel": "Epichloe typhina 201669", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl626"}, "otu161425": {"^ot:originalLabel": "Epichloe glyceriae 200747", "^ot:ottId": 89725, "^ot:ottTaxonName": "Epichloe glyceriae", "^ot:treebaseOTUId": "Tl629"}, "otu161426": {"^ot:originalLabel": "Epichloe elymi 201551", "^ot:ottId": 745528, "^ot:ottTaxonName": "Epichloe elymi", "^ot:treebaseOTUId": "Tl630"}, "otu161427": {"^ot:originalLabel": "Epichloe festucae 90661", "^ot:ottId": 137209, "^ot:ottTaxonName": "Epichloe festucae", "^ot:treebaseOTUId": "Tl631"}, "otu161428": {"^ot:originalLabel": "Epichloe baconii 76552", "^ot:ottId": 128044, "^ot:ottTaxonName": "Epichloe baconii", "^ot:treebaseOTUId": "Tl632"}, "otu161429": {"^ot:originalLabel": "Epichloe amarillans 200744", "^ot:ottId": 369201, "^ot:ottTaxonName": "Epichloe amarillans", "^ot:treebaseOTUId": "Tl633"}, "otu161430": {"^ot:originalLabel": "Epichloe brachyelytri 201561", "^ot:ottId": 905108, "^ot:ottTaxonName": "Epichloe brachyelytri", "^ot:treebaseOTUId": "Tl634"}, "otu161431": {"^ot:originalLabel": "Epichloe typhina 201666", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl636"}, "otu161432": {"^ot:originalLabel": "Epichloe baconii 200745", "^ot:ottId": 128044, "^ot:ottTaxonName": "Epichloe baconii", "^ot:treebaseOTUId": "Tl638"}, "otu161433": {"^ot:originalLabel": "Epichloe glyceriae 200755", "^ot:ottId": 89725, "^ot:ottTaxonName": "Epichloe glyceriae", "^ot:treebaseOTUId": "Tl639"}, "otu161434": {"^ot:originalLabel": "Epichloe clarkii 200742", "^ot:ottId": 4058905, "^ot:ottTaxonName": "Epichloe clarkii", "^ot:treebaseOTUId": "Tl640"}, "otu161435": {"^ot:originalLabel": "Epichloe elymi 200850", "^ot:ottId": 745528, "^ot:ottTaxonName": "Epichloe elymi", "^ot:treebaseOTUId": "Tl641"}, "otu161436": {"^ot:originalLabel": "Epichloe typhina 200740", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl644"}, "otu161437": {"^ot:originalLabel": "Epichloe amarillans 200743", "^ot:ottId": 369201, "^ot:ottTaxonName": "Epichloe amarillans", "^ot:treebaseOTUId": "Tl645"}, "otu161438": {"^ot:originalLabel": "Epichloe brachyelytri 200752", "^ot:ottId": 905108, "^ot:ottTaxonName": "Epichloe brachyelytri", "^ot:treebaseOTUId": "Tl646"}, "otu161439": {"^ot:originalLabel": "Epichloe bromicola 200749", "^ot:ottId": 905106, "^ot:ottTaxonName": "Epichloe bromicola", "^ot:treebaseOTUId": "Tl647"}, "otu161440": {"^ot:originalLabel": "Epichloe baconii 90167", "^ot:ottId": 128044, "^ot:ottTaxonName": "Epichloe baconii", "^ot:treebaseOTUId": "Tl648"}, "otu161441": {"^ot:originalLabel": "Epichloe bromicola 201559", "^ot:ottId": 905106, "^ot:ottTaxonName": "Epichloe bromicola", "^ot:treebaseOTUId": "Tl649"}, "otu161442": {"^ot:originalLabel": "Epichloe festucae 434", "^ot:ottId": 137209, "^ot:ottTaxonName": "Epichloe festucae", "^ot:treebaseOTUId": "Tl7008"}, "otu161443": {"^ot:originalLabel": "Epichloe typhina 200738", "^ot:ottId": 103011, "^ot:ottTaxonName": "Epichloe typhina", "^ot:treebaseOTUId": "Tl7013"}}}}, "treesById": {"trees463": {"@otus": "otus463", "^ot:treeElementOrder": ["tree604", "tree605"], "treeById": {"tree604": {"@label": "FIG. 8. Phylogenetic tree of Epichlo\u00eb and Neotyphodium species, based on partial tubB sequences including the first three introns. For hybrid endophytes, different haplotypes are indicated by a, b, or c after the isolate designation.", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:branchLengthTimeUnit": "Myr", "^ot:curatedType": "Maximum likelihood ", "^ot:inGroupClade": "node316648", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node316648", "^ot:specifiedRoot": "node316648", "^ot:tag": ["b-tubulin"], "^ot:unrootedTree": false, "edgeBySourceId": {"node316648": {"edge316649": {"@source": "node316648", "@target": "node316649"}, "edge316701": {"@source": "node316648", "@target": "node316701"}}, "node316649": {"edge316650": {"@source": "node316649", "@target": "node316650"}, "edge316669": {"@source": "node316649", "@target": "node316669"}, "edge316672": {"@source": "node316649", "@target": "node316672"}, "edge316675": {"@source": "node316649", "@target": "node316675"}, "edge316676": {"@source": "node316649", "@target": "node316676"}, "edge316677": {"@source": "node316649", "@target": "node316677"}, "edge316691": {"@source": "node316649", "@target": "node316691"}}, "node316650": {"edge316651": {"@source": "node316650", "@target": "node316651"}, "edge316654": {"@source": "node316650", "@target": "node316654"}}, "node316651": {"edge316652": {"@source": "node316651", "@target": "node316652"}, "edge316653": {"@source": "node316651", "@target": "node316653"}}, "node316654": {"edge316655": {"@source": "node316654", "@target": "node316655"}, "edge316666": {"@source": "node316654", "@target": "node316666"}}, "node316655": {"edge316656": {"@source": "node316655", "@target": "node316656"}, "edge316659": {"@source": "node316655", "@target": "node316659"}}, "node316656": {"edge316657": {"@source": "node316656", "@target": "node316657"}, "edge316658": {"@source": "node316656", "@target": "node316658"}}, "node316659": {"edge316660": {"@source": "node316659", "@target": "node316660"}, "edge316661": {"@source": "node316659", "@target": "node316661"}, "edge316662": {"@source": "node316659", "@target": "node316662"}, "edge316663": {"@source": "node316659", "@target": "node316663"}, "edge316664": {"@source": "node316659", "@target": "node316664"}, "edge316665": {"@source": "node316659", "@target": "node316665"}}, "node316666": {"edge316667": {"@source": "node316666", "@target": "node316667"}, "edge316668": {"@source": "node316666", "@target": "node316668"}}, "node316669": {"edge316670": {"@source": "node316669", "@target": "node316670"}, "edge316671": {"@source": "node316669", "@target": "node316671"}}, "node316672": {"edge316673": {"@source": "node316672", "@target": "node316673"}, "edge316674": {"@source": "node316672", "@target": "node316674"}}, "node316677": {"edge316678": {"@source": "node316677", "@target": "node316678"}, "edge316683": {"@source": "node316677", "@target": "node316683"}}, "node316678": {"edge316679": {"@source": "node316678", "@target": "node316679"}, "edge316682": {"@source": "node316678", "@target": "node316682"}}, "node316679": {"edge316680": {"@source": "node316679", "@target": "node316680"}, "edge316681": {"@source": "node316679", "@target": "node316681"}}, "node316683": {"edge316684": {"@source": "node316683", "@target": "node316684"}, "edge316685": {"@source": "node316683", "@target": "node316685"}, "edge316686": {"@source": "node316683", "@target": "node316686"}, "edge316687": {"@source": "node316683", "@target": "node316687"}, "edge316688": {"@source": "node316683", "@target": "node316688"}}, "node316688": {"edge316689": {"@source": "node316688", "@target": "node316689"}, "edge316690": {"@source": "node316688", "@target": "node316690"}}, "node316691": {"edge316692": {"@source": "node316691", "@target": "node316692"}, "edge316698": {"@source": "node316691", "@target": "node316698"}, "edge316699": {"@source": "node316691", "@target": "node316699"}, "edge316700": {"@source": "node316691", "@target": "node316700"}}, "node316692": {"edge316693": {"@source": "node316692", "@target": "node316693"}, "edge316694": {"@source": "node316692", "@target": "node316694"}, "edge316695": {"@source": "node316692", "@target": "node316695"}, "edge316696": {"@source": "node316692", "@target": "node316696"}, "edge316697": {"@source": "node316692", "@target": "node316697"}}, "node316701": {"edge316702": {"@source": "node316701", "@target": "node316702"}, "edge316722": {"@source": "node316701", "@target": "node316722"}}, "node316702": {"edge316703": {"@source": "node316702", "@target": "node316703"}, "edge316721": {"@source": "node316702", "@target": "node316721"}}, "node316703": {"edge316704": {"@source": "node316703", "@target": "node316704"}, "edge316719": {"@source": "node316703", "@target": "node316719"}, "edge316720": {"@source": "node316703", "@target": "node316720"}}, "node316704": {"edge316705": {"@source": "node316704", "@target": "node316705"}, "edge316718": {"@source": "node316704", "@target": "node316718"}}, "node316705": {"edge316706": {"@source": "node316705", "@target": "node316706"}, "edge316715": {"@source": "node316705", "@target": "node316715"}}, "node316706": {"edge316707": {"@source": "node316706", "@target": "node316707"}, "edge316710": {"@source": "node316706", "@target": "node316710"}}, "node316707": {"edge316708": {"@source": "node316707", "@target": "node316708"}, "edge316709": {"@source": "node316707", "@target": "node316709"}}, "node316710": {"edge316711": {"@source": "node316710", "@target": "node316711"}, "edge316712": {"@source": "node316710", "@target": "node316712"}}, "node316712": {"edge316713": {"@source": "node316712", "@target": "node316713"}, "edge316714": {"@source": "node316712", "@target": "node316714"}}, "node316715": {"edge316716": {"@source": "node316715", "@target": "node316716"}, "edge316717": {"@source": "node316715", "@target": "node316717"}}, "node316722": {"edge316723": {"@source": "node316722", "@target": "node316723"}, "edge316724": {"@source": "node316722", "@target": "node316724"}}, "node316724": {"edge316725": {"@source": "node316724", "@target": "node316725"}, "edge316726": {"@source": "node316724", "@target": "node316726"}}}, "nodeById": {"node316648": {"@root": true}, "node316649": {}, "node316650": {}, "node316651": {}, "node316652": {"@otu": "otu161438", "^ot:isTaxonExemplar": true}, "node316653": {"@otu": "otu161430", "^ot:isTaxonExemplar": false}, "node316654": {}, "node316655": {}, "node316656": {}, "node316657": {"@otu": "otu161358", "^ot:isTaxonExemplar": false}, "node316658": {"@otu": "otu161379", "^ot:isTaxonExemplar": true}, "node316659": {}, "node316660": {"@otu": "otu161368", "^ot:isTaxonExemplar": false}, "node316661": {"@otu": "otu161357", "^ot:isTaxonExemplar": false}, "node316662": {"@otu": "otu161366", "^ot:isTaxonExemplar": false}, "node316663": {"@otu": "otu161360", "^ot:isTaxonExemplar": false}, "node316664": {"@otu": "otu161369", "^ot:isTaxonExemplar": false}, "node316665": {"@otu": "otu161371", "^ot:isTaxonExemplar": true}, "node316666": {}, "node316667": {"@otu": "otu161374", "^ot:isTaxonExemplar": false}, "node316668": {"@otu": "otu161362", "^ot:isTaxonExemplar": false}, "node316669": {}, "node316670": {"@otu": "otu161437", "^ot:isTaxonExemplar": true}, "node316671": {"@otu": "otu161429", "^ot:isTaxonExemplar": false}, "node316672": {}, "node316673": {"@otu": "otu161425", "^ot:isTaxonExemplar": true}, "node316674": {"@otu": "otu161433", "^ot:isTaxonExemplar": false}, "node316675": {"@otu": "otu161428", "^ot:isTaxonExemplar": true}, "node316676": {"@otu": "otu161432", "^ot:isTaxonExemplar": false}, "node316677": {}, "node316678": {}, "node316679": {}, "node316680": {"@otu": "otu161439", "^ot:isTaxonExemplar": true}, "node316681": {"@otu": "otu161441", "^ot:isTaxonExemplar": false}, "node316682": {"@otu": "otu161372"}, "node316683": {}, "node316684": {"@otu": "otu161364", "^ot:isTaxonExemplar": false}, "node316685": {"@otu": "otu161382", "^ot:isTaxonExemplar": false}, "node316686": {"@otu": "otu161376", "^ot:isTaxonExemplar": false}, "node316687": {"@otu": "otu161381", "^ot:isTaxonExemplar": true}, "node316688": {}, "node316689": {"@otu": "otu161435", "^ot:isTaxonExemplar": true}, "node316690": {"@otu": "otu161426", "^ot:isTaxonExemplar": false}, "node316691": {}, "node316692": {}, "node316693": {"@otu": "otu161380"}, "node316694": {"@otu": "otu161363", "^ot:isTaxonExemplar": false}, "node316695": {"@otu": "otu161375", "^ot:isTaxonExemplar": false}, "node316696": {"@otu": "otu161367", "^ot:isTaxonExemplar": false}, "node316697": {"@otu": "otu161356", "^ot:isTaxonExemplar": false}, "node316698": {"@otu": "otu161427"}, "node316699": {"@otu": "otu161365"}, "node316700": {"@otu": "otu161370"}, "node316701": {}, "node316702": {}, "node316703": {}, "node316704": {}, "node316705": {}, "node316706": {}, "node316707": {}, "node316708": {"@otu": "otu161434"}, "node316709": {"@otu": "otu161422"}, "node316710": {}, "node316711": {"@otu": "otu161431"}, "node316712": {}, "node316713": {"@otu": "otu161361", "^ot:isTaxonExemplar": false}, "node316714": {"@otu": "otu161359", "^ot:isTaxonExemplar": false}, "node316715": {}, "node316716": {"@otu": "otu161443"}, "node316717": {"@otu": "otu161436"}, "node316718": {"@otu": "otu161421"}, "node316719": {"@otu": "otu161423"}, "node316720": {"@otu": "otu161424"}, "node316721": {"@otu": "otu161420"}, "node316722": {}, "node316723": {"@otu": "otu161377"}, "node316724": {}, "node316725": {"@otu": "otu161378"}, "node316726": {"@otu": "otu161373"}}}, "tree605": {"@label": "FIG. 9. Phylogenetic tree of Epichlo\u00eb and Neotyphodium species, based on partial actG sequences. Included in the actG sequence alignment was part of the first intron, all of introns 2 and 3, and part of the fourth intron.", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "ot:undefined", "^ot:branchLengthTimeUnit": "Myr", "^ot:curatedType": "Maximum likelihood ", "^ot:inGroupClade": "", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node316727", "^ot:specifiedRoot": "node316727", "^ot:tag": ["actG"], "^ot:unrootedTree": false, "edgeBySourceId": {"node316727": {"edge316728": {"@source": "node316727", "@target": "node316728"}, "edge316731": {"@source": "node316727", "@target": "node316731"}, "edge316818": {"@source": "node316727", "@target": "node316818"}}, "node316728": {"edge316729": {"@source": "node316728", "@target": "node316729"}, "edge316730": {"@source": "node316728", "@target": "node316730"}}, "node316731": {"edge316732": {"@source": "node316731", "@target": "node316732"}, "edge316804": {"@source": "node316731", "@target": "node316804"}}, "node316732": {"edge316733": {"@source": "node316732", "@target": "node316733"}, "edge316758": {"@source": "node316732", "@target": "node316758"}}, "node316733": {"edge316734": {"@source": "node316733", "@target": "node316734"}, "edge316738": {"@source": "node316733", "@target": "node316738"}, "edge316750": {"@source": "node316733", "@target": "node316750"}, "edge316751": {"@source": "node316733", "@target": "node316751"}}, "node316734": {"edge316735": {"@source": "node316734", "@target": "node316735"}, "edge316736": {"@source": "node316734", "@target": "node316736"}, "edge316737": {"@source": "node316734", "@target": "node316737"}}, "node316738": {"edge316739": {"@source": "node316738", "@target": "node316739"}, "edge316740": {"@source": "node316738", "@target": "node316740"}}, "node316740": {"edge316741": {"@source": "node316740", "@target": "node316741"}, "edge316742": {"@source": "node316740", "@target": "node316742"}, "edge316743": {"@source": "node316740", "@target": "node316743"}, "edge316744": {"@source": "node316740", "@target": "node316744"}, "edge316745": {"@source": "node316740", "@target": "node316745"}, "edge316748": {"@source": "node316740", "@target": "node316748"}, "edge316749": {"@source": "node316740", "@target": "node316749"}}, "node316745": {"edge316746": {"@source": "node316745", "@target": "node316746"}, "edge316747": {"@source": "node316745", "@target": "node316747"}}, "node316751": {"edge316752": {"@source": "node316751", "@target": "node316752"}, "edge316755": {"@source": "node316751", "@target": "node316755"}}, "node316752": {"edge316753": {"@source": "node316752", "@target": "node316753"}, "edge316754": {"@source": "node316752", "@target": "node316754"}}, "node316755": {"edge316756": {"@source": "node316755", "@target": "node316756"}, "edge316757": {"@source": "node316755", "@target": "node316757"}}, "node316758": {"edge316759": {"@source": "node316758", "@target": "node316759"}, "edge316767": {"@source": "node316758", "@target": "node316767"}}, "node316759": {"edge316760": {"@source": "node316759", "@target": "node316760"}, "edge316763": {"@source": "node316759", "@target": "node316763"}}, "node316760": {"edge316761": {"@source": "node316760", "@target": "node316761"}, "edge316762": {"@source": "node316760", "@target": "node316762"}}, "node316763": {"edge316764": {"@source": "node316763", "@target": "node316764"}, "edge316765": {"@source": "node316763", "@target": "node316765"}, "edge316766": {"@source": "node316763", "@target": "node316766"}}, "node316767": {"edge316768": {"@source": "node316767", "@target": "node316768"}, "edge316791": {"@source": "node316767", "@target": "node316791"}}, "node316768": {"edge316769": {"@source": "node316768", "@target": "node316769"}, "edge316787": {"@source": "node316768", "@target": "node316787"}, "edge316790": {"@source": "node316768", "@target": "node316790"}}, "node316769": {"edge316770": {"@source": "node316769", "@target": "node316770"}, "edge316775": {"@source": "node316769", "@target": "node316775"}}, "node316770": {"edge316771": {"@source": "node316770", "@target": "node316771"}, "edge316774": {"@source": "node316770", "@target": "node316774"}}, "node316771": {"edge316772": {"@source": "node316771", "@target": "node316772"}, "edge316773": {"@source": "node316771", "@target": "node316773"}}, "node316775": {"edge316776": {"@source": "node316775", "@target": "node316776"}, "edge316786": {"@source": "node316775", "@target": "node316786"}}, "node316776": {"edge316777": {"@source": "node316776", "@target": "node316777"}, "edge316785": {"@source": "node316776", "@target": "node316785"}}, "node316777": {"edge316778": {"@source": "node316777", "@target": "node316778"}, "edge316779": {"@source": "node316777", "@target": "node316779"}, "edge316780": {"@source": "node316777", "@target": "node316780"}, "edge316781": {"@source": "node316777", "@target": "node316781"}, "edge316782": {"@source": "node316777", "@target": "node316782"}, "edge316783": {"@source": "node316777", "@target": "node316783"}, "edge316784": {"@source": "node316777", "@target": "node316784"}}, "node316787": {"edge316788": {"@source": "node316787", "@target": "node316788"}, "edge316789": {"@source": "node316787", "@target": "node316789"}}, "node316791": {"edge316792": {"@source": "node316791", "@target": "node316792"}, "edge316793": {"@source": "node316791", "@target": "node316793"}}, "node316793": {"edge316794": {"@source": "node316793", "@target": "node316794"}, "edge316803": {"@source": "node316793", "@target": "node316803"}}, "node316794": {"edge316795": {"@source": "node316794", "@target": "node316795"}, "edge316802": {"@source": "node316794", "@target": "node316802"}}, "node316795": {"edge316796": {"@source": "node316795", "@target": "node316796"}, "edge316801": {"@source": "node316795", "@target": "node316801"}}, "node316796": {"edge316797": {"@source": "node316796", "@target": "node316797"}, "edge316798": {"@source": "node316796", "@target": "node316798"}}, "node316798": {"edge316799": {"@source": "node316798", "@target": "node316799"}, "edge316800": {"@source": "node316798", "@target": "node316800"}}, "node316804": {"edge316805": {"@source": "node316804", "@target": "node316805"}, "edge316814": {"@source": "node316804", "@target": "node316814"}}, "node316805": {"edge316806": {"@source": "node316805", "@target": "node316806"}, "edge316813": {"@source": "node316805", "@target": "node316813"}}, "node316806": {"edge316807": {"@source": "node316806", "@target": "node316807"}, "edge316812": {"@source": "node316806", "@target": "node316812"}}, "node316807": {"edge316808": {"@source": "node316807", "@target": "node316808"}, "edge316811": {"@source": "node316807", "@target": "node316811"}}, "node316808": {"edge316809": {"@source": "node316808", "@target": "node316809"}, "edge316810": {"@source": "node316808", "@target": "node316810"}}, "node316814": {"edge316815": {"@source": "node316814", "@target": "node316815"}, "edge316816": {"@source": "node316814", "@target": "node316816"}, "edge316817": {"@source": "node316814", "@target": "node316817"}}, "node316818": {"edge316819": {"@source": "node316818", "@target": "node316819"}, "edge316841": {"@source": "node316818", "@target": "node316841"}}, "node316819": {"edge316820": {"@source": "node316819", "@target": "node316820"}, "edge316829": {"@source": "node316819", "@target": "node316829"}}, "node316820": {"edge316821": {"@source": "node316820", "@target": "node316821"}, "edge316828": {"@source": "node316820", "@target": "node316828"}}, "node316821": {"edge316822": {"@source": "node316821", "@target": "node316822"}, "edge316823": {"@source": "node316821", "@target": "node316823"}, "edge316824": {"@source": "node316821", "@target": "node316824"}, "edge316825": {"@source": "node316821", "@target": "node316825"}, "edge316826": {"@source": "node316821", "@target": "node316826"}, "edge316827": {"@source": "node316821", "@target": "node316827"}}, "node316829": {"edge316830": {"@source": "node316829", "@target": "node316830"}, "edge316838": {"@source": "node316829", "@target": "node316838"}, "edge316839": {"@source": "node316829", "@target": "node316839"}, "edge316840": {"@source": "node316829", "@target": "node316840"}}, "node316830": {"edge316831": {"@source": "node316830", "@target": "node316831"}, "edge316832": {"@source": "node316830", "@target": "node316832"}, "edge316833": {"@source": "node316830", "@target": "node316833"}, "edge316834": {"@source": "node316830", "@target": "node316834"}, "edge316835": {"@source": "node316830", "@target": "node316835"}, "edge316836": {"@source": "node316830", "@target": "node316836"}, "edge316837": {"@source": "node316830", "@target": "node316837"}}, "node316841": {"edge316842": {"@source": "node316841", "@target": "node316842"}, "edge316843": {"@source": "node316841", "@target": "node316843"}}}, "nodeById": {"node316727": {"@root": true}, "node316728": {}, "node316729": {"@otu": "otu161425", "^ot:isTaxonExemplar": true}, "node316730": {"@otu": "otu161433", "^ot:isTaxonExemplar": false}, "node316731": {}, "node316732": {}, "node316733": {}, "node316734": {}, "node316735": {"@otu": "otu161437", "^ot:isTaxonExemplar": true}, "node316736": {"@otu": "otu161429", "^ot:isTaxonExemplar": false}, "node316737": {"@otu": "otu161394"}, "node316738": {}, "node316739": {"@otu": "otu161405"}, "node316740": {}, "node316741": {"@otu": "otu161442", "^ot:isTaxonExemplar": true}, "node316742": {"@otu": "otu161427", "^ot:isTaxonExemplar": false}, "node316743": {"@otu": "otu161413"}, "node316744": {"@otu": "otu161397"}, "node316745": {}, "node316746": {"@otu": "otu161365"}, "node316747": {"@otu": "otu161370"}, "node316748": {"@otu": "otu161387"}, "node316749": {"@otu": "otu161396"}, "node316750": {"@otu": "otu161432"}, "node316751": {}, "node316752": {}, "node316753": {"@otu": "otu161428"}, "node316754": {"@otu": "otu161440"}, "node316755": {}, "node316756": {"@otu": "otu161388"}, "node316757": {"@otu": "otu161417"}, "node316758": {}, "node316759": {}, "node316760": {}, "node316761": {"@otu": "otu161438", "^ot:isTaxonExemplar": true}, "node316762": {"@otu": "otu161430", "^ot:isTaxonExemplar": false}, "node316763": {}, "node316764": {"@otu": "otu161377"}, "node316765": {"@otu": "otu161378"}, "node316766": {"@otu": "otu161373"}, "node316767": {}, "node316768": {}, "node316769": {}, "node316770": {}, "node316771": {}, "node316772": {"@otu": "otu161434"}, "node316773": {"@otu": "otu161392"}, "node316774": {"@otu": "otu161389"}, "node316775": {}, "node316776": {}, "node316777": {}, "node316778": {"@otu": "otu161409"}, "node316779": {"@otu": "otu161361"}, "node316780": {"@otu": "otu161416"}, "node316781": {"@otu": "otu161386"}, "node316782": {"@otu": "otu161414"}, "node316783": {"@otu": "otu161383"}, "node316784": {"@otu": "otu161359"}, "node316785": {"@otu": "otu161404"}, "node316786": {"@otu": "otu161400"}, "node316787": {}, "node316788": {"@otu": "otu161399"}, "node316789": {"@otu": "otu161354"}, "node316790": {"@otu": "otu161421"}, "node316791": {}, "node316792": {"@otu": "otu161390"}, "node316793": {}, "node316794": {}, "node316795": {}, "node316796": {}, "node316797": {"@otu": "otu161408"}, "node316798": {}, "node316799": {"@otu": "otu161401"}, "node316800": {"@otu": "otu161395"}, "node316801": {"@otu": "otu161407"}, "node316802": {"@otu": "otu161418"}, "node316803": {"@otu": "otu161403"}, "node316804": {}, "node316805": {}, "node316806": {}, "node316807": {}, "node316808": {}, "node316809": {"@otu": "otu161355"}, "node316810": {"@otu": "otu161353"}, "node316811": {"@otu": "otu161439"}, "node316812": {"@otu": "otu161406"}, "node316813": {"@otu": "otu161398"}, "node316814": {}, "node316815": {"@otu": "otu161435", "^ot:isTaxonExemplar": true}, "node316816": {"@otu": "otu161426", "^ot:isTaxonExemplar": false}, "node316817": {"@otu": "otu161384"}, "node316818": {}, "node316819": {}, "node316820": {}, "node316821": {}, "node316822": {"@otu": "otu161358"}, "node316823": {"@otu": "otu161385"}, "node316824": {"@otu": "otu161412"}, "node316825": {"@otu": "otu161410"}, "node316826": {"@otu": "otu161391"}, "node316827": {"@otu": "otu161379"}, "node316828": {"@otu": "otu161415"}, "node316829": {}, "node316830": {}, "node316831": {"@otu": "otu161368"}, "node316832": {"@otu": "otu161366"}, "node316833": {"@otu": "otu161360"}, "node316834": {"@otu": "otu161419"}, "node316835": {"@otu": "otu161369"}, "node316836": {"@otu": "otu161402"}, "node316837": {"@otu": "otu161371"}, "node316838": {"@otu": "otu161411"}, "node316839": {"@otu": "otu161357"}, "node316840": {"@otu": "otu161393"}, "node316841": {}, "node316842": {"@otu": "otu161362"}, "node316843": {"@otu": "otu161374"}}}}}}}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "006833954c47fc6dc652bf41176e5c1e3513ff2a", "author_name": "Romina Gazis", "author_email": "gazisromina@gmail.com", "date": "Mon, 28 Sep 2015 17:19:42 +0000", "date_ISO_8601": "2015-09-28 17:19:42 +0000", "relative_date": "11 years ago", "message_subject": "conflict because of paraphyletic taxa", "message_body": "(Update Study #pg_463 via OpenTree API)"}, {"id": "a945e81a4f6807fcc3254a67847868b7513c7e1a", "author_name": "Romina Gazis", "author_email": "gazisromina@gmail.com", "date": "Mon, 28 Sep 2015 17:14:13 +0000", "date_ISO_8601": "2015-09-28 17:14:13 +0000", "relative_date": "11 years ago", "message_subject": "Update Study #pg_463 via OpenTree API"}, {"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}