{"sha": "c33806c9ee11db205ee8c02a42e31b1c3128e299", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}, {"@description": "Web-based interface for submitting, editing, and reviewing studies in the Open Tree of Life project.", "@id": "opentree-curation-webapp", "@name": "OpenTree curation webapp", "@url": "https://github.com/OpenTreeOfLife/opentree", "@version": "0.0.0"}]}, "^ot:annotationEvents": {"annotation": [{"@dateCreated": "2014-10-07T12:54:35.616Z", "@description": "Aids for mapping study OTUs to OTT taxa", "@id": "otu-mapping-hints", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "OTU_MAPPING_HINTS", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"searchContext": {"$": "All life"}, "substitutions": {"substitution": [{"@active": false, "@valid": true, "new": {"$": ""}, "old": {"$": ""}}]}, "useFuzzyMatching": false}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@dateCreated": "2014-10-07T12:54:35.616Z", "@description": "Describes supporting data files for this study", "@id": "supporting-files-metadata", "@passedChecks": true, "@preserve": true, "@wasAssociatedWithAgentId": "opentree-curation-webapp", "message": [{"@code": "SUPPORTING_FILE_INFO", "@humanMessageType": "NONE", "@severity": "INFO", "data": {"@movedToPermanentArchive": false, "files": {"file": []}}, "refersTo": {"@top": {"$": "meta"}}}]}, {"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "UNRECOGNIZED_KEY", "data": ["^ot:comment"], "refersTo": {"@top": "nexml", "@idref": "study"}, "@severity": "WARNING"}, {"@code": "UNRECOGNIZED_KEY", "data": ["^ot:nodeLabelMode", "^ot:nodeLabelTimeUnit"], "refersTo": {"@top": "trees", "@idref": "tree5290", "@treesID": "trees606", "@treeID": "tree5290"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree5290"], "^ot:comment": "", "^ot:curatorName": ["bryan drew", "Jonathan A Rees"], "^ot:dataDeposit": {"@href": "http://purl.org/phylo/treebase/phylows/study/TB2:S1294"}, "^ot:focalCladeOTTTaxonName": "", "^ot:messages": {"message": []}, "^ot:notIntendedForSynthesis": false, "^ot:otusElementOrder": ["otus606"], "^ot:studyId": "pg_606", "^ot:studyPublication": {"@href": "http://books.google.com/books?id=vbBaAAAACAAJ"}, "^ot:studyPublicationReference": "Steele K., & Wojciechowski M. 2003. \"Phylogenetic analyses of tribes Trifolieae and Vicieae based on sequences of the plastid gene matK (Papilionoideae: Leguminosae).\" In: Klitgaard B., & Bruneau A., eds. Advances in Legume Systematics, part 10. pp. 355-370. London, Royal Botanic Gardens, Kew.", "^ot:studyYear": 2003, "^ot:tag": [], "^ot:treesElementOrder": ["trees606"], "otusById": {"otus606": {"otuById": {"otu176056": {"^ot:originalLabel": "Lathyrus sativus", "^ot:ottId": 510046, "^ot:ottTaxonName": "Lathyrus sativus", "^ot:treebaseOTUId": "Tl155139"}, "otu176057": {"^ot:originalLabel": "Trifolium repens", "^ot:ottId": 116218, "^ot:ottTaxonName": "Trifolium repens", "^ot:treebaseOTUId": "Tl155140"}, "otu176058": {"^ot:originalLabel": "Trifolium willdenovii", "^ot:ottId": 1072847, "^ot:ottTaxonName": "Trifolium willdenovii", "^ot:treebaseOTUId": "Tl155142"}, "otu176059": {"^ot:originalLabel": "Lens culinaris", "^ot:ottId": 156245, "^ot:ottTaxonName": "Lens culinaris", "^ot:treebaseOTUId": "Tl155143"}, "otu176060": {"^ot:originalLabel": "Ononis natrix", "^ot:ottId": 1072855, "^ot:ottTaxonName": "Ononis natrix", "^ot:treebaseOTUId": "Tl155144"}, "otu176061": {"^ot:originalLabel": "Trifolium burchellianum", "^ot:ottId": 540596, "^ot:ottTaxonName": "Trifolium burchellianum", "^ot:treebaseOTUId": "Tl155147"}, "otu176062": {"^ot:originalLabel": "Medicago platycarpa", "^ot:ottId": 785644, "^ot:ottTaxonName": "Medicago platycarpa", "^ot:treebaseOTUId": "Tl155149"}, "otu176063": {"^ot:originalLabel": "Trigonella arabica", "^ot:ottId": 262304, "^ot:ottTaxonName": "Trigonella arabica", "^ot:treebaseOTUId": "Tl155151"}, "otu176064": {"^ot:originalLabel": "Trigonella cretica", "^ot:ottId": 1007989, "^ot:ottTaxonName": "Trigonella cretica", "^ot:treebaseOTUId": "Tl155152"}, "otu176065": {"^ot:originalLabel": "Vicia hirsuta", "^ot:ottId": 1065971, "^ot:ottTaxonName": "Vicia hirsuta", "^ot:treebaseOTUId": "Tl155153"}, "otu176066": {"^ot:originalLabel": "Trigonella spruneriana", "^ot:ottId": 262310, "^ot:ottTaxonName": "Trigonella spruneriana", "^ot:treebaseOTUId": "Tl155154"}, "otu176067": {"^ot:originalLabel": "Medicago radiata", "^ot:ottId": 56946, "^ot:ottTaxonName": "Medicago radiata", "^ot:treebaseOTUId": "Tl155155"}, "otu176068": {"^ot:originalLabel": "Vicia ludoviciana", "^ot:ottId": 230195, "^ot:ottTaxonName": "Vicia ludoviciana", "^ot:treebaseOTUId": "Tl155158"}, "otu176069": {"^ot:originalLabel": "Lathyrus aphaca", "^ot:ottId": 1036586, "^ot:ottTaxonName": "Lathyrus aphaca", "^ot:treebaseOTUId": "Tl155159"}, "otu176070": {"^ot:originalLabel": "Trifolium microcephalum", "^ot:ottId": 1072852, "^ot:ottTaxonName": "Trifolium microcephalum", "^ot:treebaseOTUId": "Tl155161"}, "otu176071": {"^ot:originalLabel": "Melilotus indica", "^ot:ottId": 1072867, "^ot:ottTaxonName": "Melilotus indicus", "^ot:treebaseOTUId": "Tl155163"}, "otu176072": {"^ot:originalLabel": "Trifolium caucasicum", "^ot:ottId": 1072857, "^ot:ottTaxonName": "Trifolium caucasicum", "^ot:treebaseOTUId": "Tl155164"}, "otu176073": {"^ot:originalLabel": "Trifolium fragiferum", "^ot:ottId": 76058, "^ot:ottTaxonName": "Trifolium fragiferum", "^ot:treebaseOTUId": "Tl155165"}, "otu176074": {"^ot:originalLabel": "Lathyrus latifolius", "^ot:ottId": 136995, "^ot:ottTaxonName": "Lathyrus latifolius", "^ot:treebaseOTUId": "Tl155166"}, "otu176075": {"^ot:originalLabel": "Pisum sativum", "^ot:ottId": 359905, "^ot:ottTaxonName": "Pisum sativum", "^ot:treebaseOTUId": "Tl155167"}, "otu176076": {"^ot:originalLabel": "Vicia sativa", "^ot:ottId": 1056096, "^ot:ottTaxonName": "Vicia sativa", "^ot:treebaseOTUId": "Tl155168"}, "otu176077": {"^ot:originalLabel": "Trifolium hirtum", "^ot:ottId": 301791, "^ot:ottTaxonName": "Trifolium hirtum", "^ot:treebaseOTUId": "Tl155171"}, "otu176078": {"^ot:originalLabel": "Medicago prostrata", "^ot:ottId": 510777, "^ot:ottTaxonName": "Medicago prostrata", "^ot:treebaseOTUId": "Tl155172"}, "otu176079": {"^ot:originalLabel": "Galega orientalis", "^ot:ottId": 761640, "^ot:ottTaxonName": "Galega orientalis", "^ot:treebaseOTUId": "Tl155173"}, "otu176080": {"^ot:originalLabel": "Parochetus communis", "^ot:ottId": 496549, "^ot:ottTaxonName": "Parochetus communis", "^ot:treebaseOTUId": "Tl155174"}, "otu176081": {"^ot:originalLabel": "Vicia americana", "^ot:ottId": 445950, "^ot:ottTaxonName": "Vicia americana", "^ot:treebaseOTUId": "Tl155175"}, "otu176082": {"^ot:originalLabel": "Trifolium albopurpureum", "^ot:ottId": 540582, "^ot:ottTaxonName": "Trifolium albopurpureum", "^ot:treebaseOTUId": "Tl155176"}, "otu176083": {"^ot:originalLabel": "Vicia villosa", "^ot:ottId": 1065968, "^ot:ottTaxonName": "Vicia villosa", "^ot:treebaseOTUId": "Tl155178"}, "otu176084": {"^ot:originalLabel": "Trifolium semipilosum", "^ot:ottId": 592389, "^ot:ottTaxonName": "Trifolium semipilosum", "^ot:treebaseOTUId": "Tl155179"}, "otu176085": {"^ot:originalLabel": "Trigonella foenum graecum", "^ot:ottId": 1007994, "^ot:ottTaxonName": "Trigonella foenum-graecum", "^ot:treebaseOTUId": "Tl155180"}, "otu176086": {"^ot:originalLabel": "Medicago orbicularis", "^ot:ottId": 1001767, "^ot:ottTaxonName": "Medicago orbicularis", "^ot:treebaseOTUId": "Tl155183"}, "otu176087": {"^ot:originalLabel": "Medicago polymorpha", "^ot:ottId": 38031, "^ot:ottTaxonName": "Medicago polymorpha", "^ot:treebaseOTUId": "Tl155184"}, "otu176088": {"^ot:originalLabel": "Trifolium gracilentum", "^ot:ottId": 1066891, "^ot:ottTaxonName": "Trifolium gracilentum", "^ot:treebaseOTUId": "Tl155185"}, "otu176089": {"^ot:originalLabel": "Melilotus alba", "^ot:ottId": 38042, "^ot:ottTaxonName": "Melilotus albus", "^ot:treebaseOTUId": "Tl155186"}, "otu176090": {"^ot:originalLabel": "Medicago biflora", "^ot:ottId": 525751, "^ot:ottTaxonName": "Medicago biflora", "^ot:treebaseOTUId": "Tl155187"}, "otu176091": {"^ot:originalLabel": "Medicago brachycarpa", "^ot:ottId": 525762, "^ot:ottTaxonName": "Medicago brachycarpa", "^ot:treebaseOTUId": "Tl155190"}, "otu176092": {"^ot:originalLabel": "Trifolium lupinaster", "^ot:ottId": 1066885, "^ot:ottTaxonName": "Trifolium lupinaster", "^ot:treebaseOTUId": "Tl155192"}, "otu176093": {"^ot:originalLabel": "Medicago truncatula", "^ot:ottId": 1060499, "^ot:ottTaxonName": "Medicago truncatula", "^ot:treebaseOTUId": "Tl155193"}, "otu176094": {"^ot:originalLabel": "Cicer pinnatifidum", "^ot:ottId": 38056, "^ot:ottTaxonName": "Cicer pinnatifidum", "^ot:treebaseOTUId": "Tl155194"}, "otu176095": {"^ot:originalLabel": "Trifolium spumosum", "^ot:ottId": 230325, "^ot:ottTaxonName": "Trifolium spumosum", "^ot:treebaseOTUId": "Tl155195"}, "otu176096": {"^ot:originalLabel": "Trigonella corniculata", "^ot:ottId": 445953, "^ot:ottTaxonName": "Trigonella corniculata", "^ot:treebaseOTUId": "Tl155198"}, "otu176097": {"^ot:originalLabel": "Trifolium hybridum", "^ot:ottId": 1066895, "^ot:ottTaxonName": "Trifolium hybridum", "^ot:treebaseOTUId": "Tl155199"}, "otu176098": {"^ot:originalLabel": "Trifolium nanum", "^ot:ottId": 38035, "^ot:ottTaxonName": "Trifolium nanum", "^ot:treebaseOTUId": "Tl155200"}, "otu176099": {"^ot:originalLabel": "Trifolium patulum", "^ot:ottId": 1072845, "^ot:ottTaxonName": "Trifolium patulum", "^ot:treebaseOTUId": "Tl155205"}, "otu176100": {"^ot:originalLabel": "Medicago ruthenica", "^ot:ottId": 424988, "^ot:ottTaxonName": "Medicago ruthenica", "^ot:treebaseOTUId": "Tl155206"}, "otu176101": {"^ot:originalLabel": "Ononis arvensis", "^ot:ottId": 1072859, "^ot:ottTaxonName": "Ononis arvensis", "^ot:treebaseOTUId": "Tl155208"}, "otu176102": {"^ot:originalLabel": "Trifolium striatum", "^ot:ottId": 230329, "^ot:ottTaxonName": "Trifolium striatum", "^ot:treebaseOTUId": "Tl155209"}, "otu176103": {"^ot:originalLabel": "Trifolium incarnatum", "^ot:ottId": 705473, "^ot:ottTaxonName": "Trifolium incarnatum", "^ot:treebaseOTUId": "Tl155210"}, "otu176104": {"^ot:originalLabel": "Medicago sativa", "^ot:ottId": 1086789, "^ot:ottTaxonName": "Medicago sativa", "^ot:treebaseOTUId": "Tl155212"}, "otu176105": {"^ot:originalLabel": "Trifolium resupinatum", "^ot:ottId": 597375, "^ot:ottTaxonName": "Trifolium resupinatum", "^ot:treebaseOTUId": "Tl155213"}, "otu176106": {"^ot:originalLabel": "Trigonella kotschyi", "^ot:ottId": 262307, "^ot:ottTaxonName": "Trigonella kotschyi", "^ot:treebaseOTUId": "Tl155214"}, "otu176107": {"^ot:originalLabel": "Trifolium dubium", "^ot:ottId": 76062, "^ot:ottTaxonName": "Trifolium dubium", "^ot:treebaseOTUId": "Tl155215"}, "otu176108": {"^ot:originalLabel": "Medicago italica", "^ot:ottId": 374480, "^ot:ottTaxonName": "Medicago italica", "^ot:treebaseOTUId": "Tl155216"}, "otu176109": {"^ot:originalLabel": "Medicago lanigera", "^ot:ottId": 374482, "^ot:ottTaxonName": "Medicago lanigera", "^ot:treebaseOTUId": "Tl155219"}, "otu176110": {"^ot:originalLabel": "Medicago monspeliaca", "^ot:ottId": 55944, "^ot:ottTaxonName": "Medicago monspeliaca", "^ot:treebaseOTUId": "Tl155220"}, "otu176111": {"^ot:originalLabel": "Medicago monantha", "^ot:ottId": 55941, "^ot:ottTaxonName": "Medicago monantha", "^ot:treebaseOTUId": "Tl155221"}, "otu176112": {"^ot:originalLabel": "Medicago heyniana", "^ot:ottId": 760436, "^ot:ottTaxonName": "Medicago heyniana", "^ot:treebaseOTUId": "Tl155222"}, "otu176113": {"^ot:originalLabel": "Trifolium subterraneum", "^ot:ottId": 539553, "^ot:ottTaxonName": "Trifolium subterraneum", "^ot:treebaseOTUId": "Tl293"}, "otu176114": {"^ot:originalLabel": "Medicago polyceratia", "^ot:ottId": 1001768, "^ot:ottTaxonName": "Medicago polyceratia", "^ot:treebaseOTUId": "Tl312"}, "otu176115": {"^ot:originalLabel": "Medicago medicaginoides", "^ot:ottId": 374485, "^ot:ottTaxonName": "Medicago medicaginoides", "^ot:treebaseOTUId": "Tl349"}, "otu176116": {"^ot:originalLabel": "Vicia grandiflora", "^ot:ottId": 445964, "^ot:ottTaxonName": "Vicia grandiflora", "^ot:treebaseOTUId": "Tl61710"}, "otu176117": {"^ot:originalLabel": "Trigonella caerula", "^ot:ottId": 445955, "^ot:ottTaxonName": "Trigonella caerulea", "^ot:treebaseOTUId": "Tl61711"}, "otu176118": {"^ot:originalLabel": "Vicia bengalensis", "^ot:ottId": 136983, "^ot:ottTaxonName": "Vicia benghalensis", "^ot:treebaseOTUId": "Tl61713"}, "otu176119": {"^ot:originalLabel": "Trigonella gladiata", "^ot:ottId": 230316, "^ot:ottTaxonName": "Trigonella gladiata", "^ot:treebaseOTUId": "Tl61714"}, "otu176120": {"^ot:originalLabel": "Trifolium thallii", "^ot:ottId": 19407, "^ot:ottTaxonName": "Trifolium thalii", "^ot:treebaseOTUId": "Tl61715"}, "otu176121": {"^ot:originalLabel": "Medicago hypogaea", "^ot:ottId": 760425, "^ot:ottTaxonName": "Medicago hypogaea", "^ot:treebaseOTUId": "Tl61716"}, "otu176122": {"^ot:originalLabel": "Lathyrus tingitanus", "^ot:ottId": 510040, "^ot:ottTaxonName": "Lathyrus tingitanus", "^ot:treebaseOTUId": "Tl61717"}, "otu176123": {"^ot:originalLabel": "Trifolium wormskoldii", "^ot:ottId": 486511, "^ot:ottTaxonName": "Trifolium wormskioldii", "^ot:treebaseOTUId": "Tl61718"}, "otu176124": {"^ot:originalLabel": "Cicer macracanthum", "^ot:ottId": 496543, "^ot:ottTaxonName": "Cicer macracanthum", "^ot:treebaseOTUId": "Tl61719"}, "otu176125": {"^ot:originalLabel": "Trigonella balsanae", "^ot:ottId": 445962, "^ot:ottTaxonName": "Trigonella balansae", "^ot:treebaseOTUId": "Tl61720"}, "otu176126": {"^ot:originalLabel": "Trigonella calliceris", "^ot:ottId": 262305, "^ot:ottTaxonName": "Trigonella calliceras", "^ot:treebaseOTUId": "Tl61721"}, "otu176127": {"^ot:originalLabel": "Trigonella macrorrhyncha", "^ot:ottId": 262308, "^ot:ottTaxonName": "Trigonella macrorrhyncha", "^ot:treebaseOTUId": "Tl61722"}, "otu176128": {"^ot:originalLabel": "Trigonella caerulescens", "^ot:ottId": 445954, "^ot:ottTaxonName": "Trigonella coerulescens", "^ot:treebaseOTUId": "Tl61723"}, "otu176129": {"^ot:originalLabel": "Trifolium cherangiense", "^ot:ottId": 1072850, "^ot:ottTaxonName": "Trifolium cheranganiense", "^ot:treebaseOTUId": "Tl61725"}, "otu176130": {"^ot:originalLabel": "Lathyrus vestitus", "^ot:ottId": 1072864, "^ot:ottTaxonName": "Lathyrus vestitus", "^ot:treebaseOTUId": "Tl61726"}, "otu176131": {"^ot:originalLabel": "Ononis biflora", "^ot:ottId": 1072862, "^ot:ottTaxonName": "Ononis biflora", "^ot:treebaseOTUId": "Tl61727"}, "otu176132": {"^ot:originalLabel": "Cicer yamashitae", "^ot:ottId": 767268, "^ot:ottTaxonName": "Cicer yamashitae", "^ot:treebaseOTUId": "Tl61728"}, "otu176133": {"^ot:originalLabel": "Vicia lutea", "^ot:ottId": 1022502, "^ot:ottTaxonName": "Vicia lutea", "^ot:treebaseOTUId": "Tl61729"}, "otu176134": {"^ot:originalLabel": "Vicia articulata", "^ot:ottId": 445947, "^ot:ottTaxonName": "Vicia articulata", "^ot:treebaseOTUId": "Tl61730"}, "otu176135": {"^ot:originalLabel": "Lens ervoides", "^ot:ottId": 708967, "^ot:ottTaxonName": "Lens ervoides", "^ot:treebaseOTUId": "Tl61731"}, "otu176136": {"^ot:originalLabel": "Trigonella bicolor", "^ot:ottId": 486507, "^ot:ottTaxonName": "Trigonella bicolor", "^ot:treebaseOTUId": "Tl61732"}, "otu176137": {"^ot:originalLabel": "Medicago noena", "^ot:ottId": 1001764, "^ot:ottTaxonName": "Medicago noeana", "^ot:treebaseOTUId": "Tl61733"}, "otu176138": {"^ot:originalLabel": "Cicer caneriense", "^ot:ottId": 496545, "^ot:ottTaxonName": "Cicer canariense", "^ot:treebaseOTUId": "Tl61734"}, "otu176139": {"^ot:originalLabel": "Vicia gigantea", "^ot:ottId": 445966, "^ot:ottTaxonName": "Vicia nigricans subsp. gigantea", "^ot:treebaseOTUId": "Tl61735"}}}}, "treesById": {"trees606": {"@otus": "otus606", "^ot:treeElementOrder": ["tree5290"], "treeById": {"tree5290": {"@label": "Untitled (tree5290)", "@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "Fig. 1", "^ot:inGroupClade": "node920508", "^ot:nodeLabelMode": "", "^ot:nodeLabelTimeUnit": "", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node920499", "^ot:specifiedRoot": "node920499", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node920499": {"edge920500": {"@source": "node920499", "@target": "node920500"}, "edge920507": {"@source": "node920499", "@target": "node920507"}, "edge920508": {"@source": "node920499", "@target": "node920508"}, "edge920651": {"@source": "node920499", "@target": "node920651"}}, "node920500": {"edge920501": {"@source": "node920500", "@target": "node920501"}, "edge920502": {"@source": "node920500", "@target": "node920502"}}, "node920502": {"edge920503": {"@source": "node920502", "@target": "node920503"}, "edge920506": {"@source": "node920502", "@target": "node920506"}}, "node920503": {"edge920504": {"@source": "node920503", "@target": "node920504"}, "edge920505": {"@source": "node920503", "@target": "node920505"}}, "node920508": {"edge920509": {"@source": "node920508", "@target": "node920509"}, "edge920583": {"@source": "node920508", "@target": "node920583"}}, "node920509": {"edge920510": {"@source": "node920509", "@target": "node920510"}, "edge920543": {"@source": "node920509", "@target": "node920543"}}, "node920510": {"edge920511": {"@source": "node920510", "@target": "node920511"}, "edge920522": {"@source": "node920510", "@target": "node920522"}}, "node920511": {"edge920512": {"@source": "node920511", "@target": "node920512"}, "edge920521": {"@source": "node920511", "@target": "node920521"}}, "node920512": {"edge920513": {"@source": "node920512", "@target": "node920513"}, "edge920516": {"@source": "node920512", "@target": "node920516"}}, "node920513": {"edge920514": {"@source": "node920513", "@target": "node920514"}, "edge920515": {"@source": "node920513", "@target": "node920515"}}, "node920516": {"edge920517": {"@source": "node920516", "@target": "node920517"}, "edge920520": {"@source": "node920516", "@target": "node920520"}}, "node920517": {"edge920518": {"@source": "node920517", "@target": "node920518"}, "edge920519": {"@source": "node920517", "@target": "node920519"}}, "node920522": {"edge920523": {"@source": "node920522", "@target": "node920523"}, "edge920534": {"@source": "node920522", "@target": "node920534"}, "edge920537": {"@source": "node920522", "@target": "node920537"}, "edge920542": {"@source": "node920522", "@target": "node920542"}}, "node920523": {"edge920524": {"@source": "node920523", "@target": "node920524"}, "edge920527": {"@source": "node920523", "@target": "node920527"}}, "node920524": {"edge920525": {"@source": "node920524", "@target": "node920525"}, "edge920526": {"@source": "node920524", "@target": "node920526"}}, "node920527": {"edge920528": {"@source": "node920527", "@target": "node920528"}, "edge920533": {"@source": "node920527", "@target": "node920533"}}, "node920528": {"edge920529": {"@source": "node920528", "@target": "node920529"}, "edge920530": {"@source": "node920528", "@target": "node920530"}}, "node920530": {"edge920531": {"@source": "node920530", "@target": "node920531"}, "edge920532": {"@source": "node920530", "@target": "node920532"}}, "node920534": {"edge920535": {"@source": "node920534", "@target": "node920535"}, "edge920536": {"@source": "node920534", "@target": "node920536"}}, "node920537": {"edge920538": {"@source": "node920537", "@target": "node920538"}, "edge920541": {"@source": "node920537", "@target": "node920541"}}, "node920538": {"edge920539": {"@source": "node920538", "@target": "node920539"}, "edge920540": {"@source": "node920538", "@target": "node920540"}}, "node920543": {"edge920544": {"@source": "node920543", "@target": "node920544"}, "edge920582": {"@source": "node920543", "@target": "node920582"}}, "node920544": {"edge920545": {"@source": "node920544", "@target": "node920545"}, "edge920581": {"@source": "node920544", "@target": "node920581"}}, "node920545": {"edge920546": {"@source": "node920545", "@target": "node920546"}, "edge920571": {"@source": "node920545", "@target": "node920571"}}, "node920546": {"edge920547": {"@source": "node920546", "@target": "node920547"}, "edge920559": {"@source": "node920546", "@target": "node920559"}}, "node920547": {"edge920548": {"@source": "node920547", "@target": "node920548"}, "edge920556": {"@source": "node920547", "@target": "node920556"}}, "node920548": {"edge920549": {"@source": "node920548", "@target": "node920549"}, "edge920550": {"@source": "node920548", "@target": "node920550"}, "edge920551": {"@source": "node920548", "@target": "node920551"}, "edge920552": {"@source": "node920548", "@target": "node920552"}, "edge920553": {"@source": "node920548", "@target": "node920553"}}, "node920553": {"edge920554": {"@source": "node920553", "@target": "node920554"}, "edge920555": {"@source": "node920553", "@target": "node920555"}}, "node920556": {"edge920557": {"@source": "node920556", "@target": "node920557"}, "edge920558": {"@source": "node920556", "@target": "node920558"}}, "node920559": {"edge920560": {"@source": "node920559", "@target": "node920560"}, "edge920569": {"@source": "node920559", "@target": "node920569"}, "edge920570": {"@source": "node920559", "@target": "node920570"}}, "node920560": {"edge920561": {"@source": "node920560", "@target": "node920561"}, "edge920566": {"@source": "node920560", "@target": "node920566"}}, "node920561": {"edge920562": {"@source": "node920561", "@target": "node920562"}, "edge920563": {"@source": "node920561", "@target": "node920563"}}, "node920563": {"edge920564": {"@source": "node920563", "@target": "node920564"}, "edge920565": {"@source": "node920563", "@target": "node920565"}}, "node920566": {"edge920567": {"@source": "node920566", "@target": "node920567"}, "edge920568": {"@source": "node920566", "@target": "node920568"}}, "node920571": {"edge920572": {"@source": "node920571", "@target": "node920572"}, "edge920580": {"@source": "node920571", "@target": "node920580"}}, "node920572": {"edge920573": {"@source": "node920572", "@target": "node920573"}, "edge920574": {"@source": "node920572", "@target": "node920574"}}, "node920574": {"edge920575": {"@source": "node920574", "@target": "node920575"}, "edge920576": {"@source": "node920574", "@target": "node920576"}}, "node920576": {"edge920577": {"@source": "node920576", "@target": "node920577"}, "edge920578": {"@source": "node920576", "@target": "node920578"}, "edge920579": {"@source": "node920576", "@target": "node920579"}}, "node920583": {"edge920584": {"@source": "node920583", "@target": "node920584"}, "edge920646": {"@source": "node920583", "@target": "node920646"}}, "node920584": {"edge920585": {"@source": "node920584", "@target": "node920585"}, "edge920619": {"@source": "node920584", "@target": "node920619"}}, "node920585": {"edge920586": {"@source": "node920585", "@target": "node920586"}, "edge920611": {"@source": "node920585", "@target": "node920611"}}, "node920586": {"edge920587": {"@source": "node920586", "@target": "node920587"}, "edge920597": {"@source": "node920586", "@target": "node920597"}}, "node920587": {"edge920588": {"@source": "node920587", "@target": "node920588"}, "edge920593": {"@source": "node920587", "@target": "node920593"}, "edge920594": {"@source": "node920587", "@target": "node920594"}}, "node920588": {"edge920589": {"@source": "node920588", "@target": "node920589"}, "edge920592": {"@source": "node920588", "@target": "node920592"}}, "node920589": {"edge920590": {"@source": "node920589", "@target": "node920590"}, "edge920591": {"@source": "node920589", "@target": "node920591"}}, "node920594": {"edge920595": {"@source": "node920594", "@target": "node920595"}, "edge920596": {"@source": "node920594", "@target": "node920596"}}, "node920597": {"edge920598": {"@source": "node920597", "@target": "node920598"}, "edge920607": {"@source": "node920597", "@target": "node920607"}, "edge920608": {"@source": "node920597", "@target": "node920608"}}, "node920598": {"edge920599": {"@source": "node920598", "@target": "node920599"}, "edge920602": {"@source": "node920598", "@target": "node920602"}}, "node920599": {"edge920600": {"@source": "node920599", "@target": "node920600"}, "edge920601": {"@source": "node920599", "@target": "node920601"}}, "node920602": {"edge920603": {"@source": "node920602", "@target": "node920603"}, "edge920606": {"@source": "node920602", "@target": "node920606"}}, "node920603": {"edge920604": {"@source": "node920603", "@target": "node920604"}, "edge920605": {"@source": "node920603", "@target": "node920605"}}, "node920608": {"edge920609": {"@source": "node920608", "@target": "node920609"}, "edge920610": {"@source": "node920608", "@target": "node920610"}}, "node920611": {"edge920612": {"@source": "node920611", "@target": "node920612"}, "edge920618": {"@source": "node920611", "@target": "node920618"}}, "node920612": {"edge920613": {"@source": "node920612", "@target": "node920613"}, "edge920616": {"@source": "node920612", "@target": "node920616"}, "edge920617": {"@source": "node920612", "@target": "node920617"}}, "node920613": {"edge920614": {"@source": "node920613", "@target": "node920614"}, "edge920615": {"@source": "node920613", "@target": "node920615"}}, "node920619": {"edge920620": {"@source": "node920619", "@target": "node920620"}, "edge920625": {"@source": "node920619", "@target": "node920625"}, "edge920638": {"@source": "node920619", "@target": "node920638"}, "edge920643": {"@source": "node920619", "@target": "node920643"}}, "node920620": {"edge920621": {"@source": "node920620", "@target": "node920621"}, "edge920624": {"@source": "node920620", "@target": "node920624"}}, "node920621": {"edge920622": {"@source": "node920621", "@target": "node920622"}, "edge920623": {"@source": "node920621", "@target": "node920623"}}, "node920625": {"edge920626": {"@source": "node920625", "@target": "node920626"}, "edge920633": {"@source": "node920625", "@target": "node920633"}}, "node920626": {"edge920627": {"@source": "node920626", "@target": "node920627"}, "edge920632": {"@source": "node920626", "@target": "node920632"}}, "node920627": {"edge920628": {"@source": "node920627", "@target": "node920628"}, "edge920631": {"@source": "node920627", "@target": "node920631"}}, "node920628": {"edge920629": {"@source": "node920628", "@target": "node920629"}, "edge920630": {"@source": "node920628", "@target": "node920630"}}, "node920633": {"edge920634": {"@source": "node920633", "@target": "node920634"}, "edge920635": {"@source": "node920633", "@target": "node920635"}}, "node920635": {"edge920636": {"@source": "node920635", "@target": "node920636"}, "edge920637": {"@source": "node920635", "@target": "node920637"}}, "node920638": {"edge920639": {"@source": "node920638", "@target": "node920639"}, "edge920640": {"@source": "node920638", "@target": "node920640"}}, "node920640": {"edge920641": {"@source": "node920640", "@target": "node920641"}, "edge920642": {"@source": "node920640", "@target": "node920642"}}, "node920643": {"edge920644": {"@source": "node920643", "@target": "node920644"}, "edge920645": {"@source": "node920643", "@target": "node920645"}}, "node920646": {"edge920647": {"@source": "node920646", "@target": "node920647"}, "edge920648": {"@source": "node920646", "@target": "node920648"}}, "node920648": {"edge920649": {"@source": "node920648", "@target": "node920649"}, "edge920650": {"@source": "node920648", "@target": "node920650"}}}, "nodeById": {"node920499": {"@root": true}, "node920500": {}, "node920501": {"@otu": "otu176138"}, "node920502": {}, "node920503": {}, "node920504": {"@otu": "otu176124"}, "node920505": {"@otu": "otu176132"}, "node920506": {"@otu": "otu176094"}, "node920507": {"@otu": "otu176079"}, "node920508": {}, "node920509": {}, "node920510": {}, "node920511": {}, "node920512": {}, "node920513": {}, "node920514": {"@otu": "otu176069"}, "node920515": {"@otu": "otu176130"}, "node920516": {}, "node920517": {}, "node920518": {"@otu": "otu176074"}, "node920519": {"@otu": "otu176056"}, "node920520": {"@otu": "otu176122"}, "node920521": {"@otu": "otu176075"}, "node920522": {}, "node920523": {}, "node920524": {}, "node920525": {"@otu": "otu176059"}, "node920526": {"@otu": "otu176135"}, "node920527": {}, "node920528": {}, "node920529": {"@otu": "otu176081"}, "node920530": {}, "node920531": {"@otu": "otu176116"}, "node920532": {"@otu": "otu176076"}, "node920533": {"@otu": "otu176133"}, "node920534": {}, "node920535": {"@otu": "otu176134"}, "node920536": {"@otu": "otu176065"}, "node920537": {}, "node920538": {}, "node920539": {"@otu": "otu176118"}, "node920540": {"@otu": "otu176083"}, "node920541": {"@otu": "otu176068"}, "node920542": {"@otu": "otu176139"}, "node920543": {}, "node920544": {}, "node920545": {}, "node920546": {}, "node920547": {}, "node920548": {}, "node920549": {"@otu": "otu176082"}, "node920550": {"@otu": "otu176088"}, "node920551": {"@otu": "otu176070"}, "node920552": {"@otu": "otu176098"}, "node920553": {}, "node920554": {"@otu": "otu176058"}, "node920555": {"@otu": "otu176123"}, "node920556": {}, "node920557": {"@otu": "otu176057"}, "node920558": {"@otu": "otu176120"}, "node920559": {}, "node920560": {}, "node920561": {}, "node920562": {"@otu": "otu176061"}, "node920563": {}, "node920564": {"@otu": "otu176129"}, "node920565": {"@otu": "otu176084"}, "node920566": {}, "node920567": {"@otu": "otu176073"}, "node920568": {"@otu": "otu176105"}, "node920569": {"@otu": "otu176097"}, "node920570": {"@otu": "otu176095"}, "node920571": {}, "node920572": {}, "node920573": {"@otu": "otu176072"}, "node920574": {}, "node920575": {"@otu": "otu176077"}, "node920576": {}, "node920577": {"@otu": "otu176103"}, "node920578": {"@otu": "otu176099"}, "node920579": {"@otu": "otu176102"}, "node920580": {"@otu": "otu176113"}, "node920581": {"@otu": "otu176092"}, "node920582": {"@otu": "otu176107"}, "node920583": {}, "node920584": {}, "node920585": {}, "node920586": {}, "node920587": {}, "node920588": {}, "node920589": {}, "node920590": {"@otu": "otu176090"}, "node920591": {"@otu": "otu176091"}, "node920592": {"@otu": "otu176121"}, "node920593": {"@otu": "otu176109"}, "node920594": {}, "node920595": {"@otu": "otu176062"}, "node920596": {"@otu": "otu176100"}, "node920597": {}, "node920598": {}, "node920599": {}, "node920600": {"@otu": "otu176112"}, "node920601": {"@otu": "otu176087"}, "node920602": {}, "node920603": {}, "node920604": {"@otu": "otu176108"}, "node920605": {"@otu": "otu176093"}, "node920606": {"@otu": "otu176137"}, "node920607": {"@otu": "otu176086"}, "node920608": {}, "node920609": {"@otu": "otu176078"}, "node920610": {"@otu": "otu176104"}, "node920611": {}, "node920612": {}, "node920613": {}, "node920614": {"@otu": "otu176115"}, "node920615": {"@otu": "otu176111"}, "node920616": {"@otu": "otu176110"}, "node920617": {"@otu": "otu176114"}, "node920618": {"@otu": "otu176067"}, "node920619": {}, "node920620": {}, "node920621": {}, "node920622": {"@otu": "otu176089"}, "node920623": {"@otu": "otu176071"}, "node920624": {"@otu": "otu176064"}, "node920625": {}, "node920626": {}, "node920627": {}, "node920628": {}, "node920629": {"@otu": "otu176063"}, "node920630": {"@otu": "otu176125"}, "node920631": {"@otu": "otu176126"}, "node920632": {"@otu": "otu176096"}, "node920633": {}, "node920634": {"@otu": "otu176136"}, "node920635": {}, "node920636": {"@otu": "otu176106"}, "node920637": {"@otu": "otu176066"}, "node920638": {}, "node920639": {"@otu": "otu176117"}, "node920640": {}, "node920641": {"@otu": "otu176085"}, "node920642": {"@otu": "otu176119"}, "node920643": {}, "node920644": {"@otu": "otu176128"}, "node920645": {"@otu": "otu176127"}, "node920646": {}, "node920647": {"@otu": "otu176101"}, "node920648": {}, "node920649": {"@otu": "otu176131"}, "node920650": {"@otu": "otu176060"}, "node920651": {"@otu": "otu176080"}}}}}}}}, "branch2sha": {"master": "c33806c9ee11db205ee8c02a42e31b1c3128e299"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "4b20ab995a5bff99f35e1876b64a27c3d581a0bc", "author_name": "Jonathan A Rees", "author_email": "jar398@mumble.net", "date": "Tue, 7 Oct 2014 12:59:39 +0000", "date_ISO_8601": "2014-10-07 12:59:39 +0000", "relative_date": "12 years ago", "message_subject": "No DOI, ISBN 9781842460542", "message_body": "There is no good URL for this book so I've just used the Google Books URL.\n\n(Update Study #pg_606 via OpenTree API)"}, {"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "f8a738aeda20a73750847484e110a85c7a3e0a12", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 10 Jun 2014 23:36:42 -0500", "date_ISO_8601": "2014-06-10 23:36:42 -0500", "relative_date": "12 years ago", "message_subject": "Migrating info from gcmdr to nexsons", "message_body": "using peyotl d69c8b180fce7703c7203a0b51712eab57e2988c\ndev/decorate_pg_studies_with_gcmdr_info.py\nto set:\n  ^ot:candidateTreeForSynthesis\n  ^ot:specifiedRoot, and\n  ^ot:unrootedTree\nproperties based on the use of the trees for synthesis study\nlists in gcmdr commit 35bf307e72bed4f59724762dde4a12965abcea92"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}