{"sha": "7ce37ceecc08fa457e4fd28aa6ea83357bd12b8a", "data": {"nexml": {"@generator": "Phylografter nexml-json exporter", "@id": "study", "@nexml2json": "1.2.1", "@nexmljson": "http://purl.org/opentree/nexson", "@version": "0.9", "@xmlns": {"$": "http://www.nexml.org/2009", "nex": "http://www.nexml.org/2009", "ot": "http://purl.org/opentree-terms#", "xsd": "http://www.w3.org/2001/XMLSchema#", "xsi": "http://www.w3.org/2001/XMLSchema-instance"}, "^ot:agents": {"agent": [{"@description": "validator of NexSON constraints as well as constraints that would allow a study to be imported into the Open Tree of Life's phylogenetic synthesis tools", "@id": "peyotl-validator", "@name": "validate_ot_nexson.py", "@url": "https://github.com/OpenTreeOfLife/peyotl", "@version": "0.0.4a", "invocation": {"commandLine": ["--embed", "--agent-only"], "otherProperty": [{"name": "pythonVersion", "value": "2.7.5+"}, {"name": "pythonImplementation", "value": "CPython"}]}}]}, "^ot:annotationEvents": {"annotation": [{"@id": "peyotl-validator-event", "@description": "Open Tree NexSON validation", "@wasAssociatedWithAgentId": "peyotl-validator", "@passedChecks": true, "@preserve": false, "message": [{"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:inGroupClade"], "refersTo": {"@top": "trees", "@idref": "tree2877", "@treesID": "trees62", "@treeID": "tree2877"}, "@severity": "WARNING"}, {"@code": "MISSING_OPTIONAL_KEY", "data": ["^ot:inGroupClade"], "refersTo": {"@top": "trees", "@idref": "tree2880", "@treesID": "trees62", "@treeID": "tree2880"}, "@severity": "WARNING"}]}]}, "^ot:candidateTreeForSynthesis": ["tree2878"], "^ot:curatorName": "William Wysocki", "^ot:dataDeposit": {"@href": "http://purl.org/phylo/treebase/phylows/study/TB2:S1782"}, "^ot:focalClade": 97782, "^ot:focalCladeOTTTaxonName": "Lymania", "^ot:messages": {"message": []}, "^ot:otusElementOrder": ["otus62"], "^ot:studyId": "pg_62", "^ot:studyPublication": {"@href": "http://dx.doi.org/10.1600/036364407781179707"}, "^ot:studyPublicationReference": "de Oliveira Furtado de Sousa, L., Wendt, T., Brown, G. K., Tuthill, D. E., & Evans, T. M. (2007). Monophyly and phylogenetic relationships in Lymania (Bromeliaceae: Bromelioideae) based on morphology and chloroplast DNA sequences. Systematic Botany, 32(2), 264-270.", "^ot:studyYear": 2007, "^ot:tag": [], "^ot:treesElementOrder": ["trees62"], "otusById": {"otus62": {"otuById": {"otu252626": {"^ot:originalLabel": "Aechmea capixabae", "^ot:ottId": 1006177, "^ot:ottTaxonName": "Aechmea capixabae", "^ot:treebaseOTUId": "Tl47651"}, "otu252627": {"^ot:originalLabel": "Araeococcus parviflorus", "^ot:ottId": 429390, "^ot:ottTaxonName": "Araeococcus parviflorus", "^ot:treebaseOTUId": "Tl47652"}, "otu252628": {"^ot:originalLabel": "Lymania spiculata", "^ot:ottId": 955473, "^ot:ottTaxonName": "Lymania spiculata", "^ot:treebaseOTUId": "Tl47653"}, "otu252629": {"^ot:originalLabel": "Aechmea gracilis", "^ot:ottId": 1017599, "^ot:ottTaxonName": "Aechmea gracilis", "^ot:treebaseOTUId": "Tl47654"}, "otu252630": {"^ot:originalLabel": "Lymania alvimii", "^ot:ottId": 97784, "^ot:ottTaxonName": "Lymania alvimii", "^ot:treebaseOTUId": "Tl47655"}, "otu252631": {"^ot:originalLabel": "Cryptanthus beuckeri", "^ot:ottId": 780221, "^ot:ottTaxonName": "Cryptanthus beuckeri", "^ot:treebaseOTUId": "Tl47656"}, "otu252632": {"^ot:originalLabel": "Aechmea turbinocalyx", "^ot:ottId": 429388, "^ot:ottTaxonName": "Aechmea turbinocalyx", "^ot:treebaseOTUId": "Tl47657"}, "otu252633": {"^ot:originalLabel": "Aechmea miniata", "^ot:ottId": 429403, "^ot:ottTaxonName": "Aechmea miniata", "^ot:treebaseOTUId": "Tl47658"}, "otu252634": {"^ot:originalLabel": "Aechmea gamosepala", "^ot:ottId": 372746, "^ot:ottTaxonName": "Aechmea gamosepala", "^ot:treebaseOTUId": "Tl47659"}, "otu252635": {"^ot:originalLabel": "Ronnbergia brasiliensis", "^ot:ottId": 955471, "^ot:ottTaxonName": "Ronnbergia brasiliensis", "^ot:treebaseOTUId": "Tl47660"}, "otu252636": {"^ot:originalLabel": "Ronnbergia neoregelioides", "^ot:ottId": 955485, "^ot:ottTaxonName": "Ronnbergia neoregelioides", "^ot:treebaseOTUId": "Tl47661"}, "otu252637": {"^ot:originalLabel": "Aechmea racinae", "^ot:ottId": 1017609, "^ot:ottTaxonName": "Aechmea racinae", "^ot:treebaseOTUId": "Tl47662"}, "otu252638": {"^ot:originalLabel": "Lymania globosa", "^ot:ottId": 955477, "^ot:ottTaxonName": "Lymania globosa", "^ot:treebaseOTUId": "Tl47663"}, "otu252639": {"^ot:originalLabel": "Aechmea lingulata", "^ot:ottId": 429400, "^ot:ottTaxonName": "Aechmea lingulata", "^ot:treebaseOTUId": "Tl47664"}, "otu252640": {"^ot:originalLabel": "Lymania brachycaulis", "^ot:ottId": 429409, "^ot:ottTaxonName": "Lymania sp. TME-2007", "^ot:treebaseOTUId": "Tl47665"}, "otu252641": {"^ot:originalLabel": "Aechmea pedicellata", "^ot:ottId": 429405, "^ot:ottTaxonName": "Aechmea pedicellata", "^ot:treebaseOTUId": "Tl47666"}, "otu252642": {"^ot:originalLabel": "Cryptanthus bromelioides", "^ot:ottId": 429393, "^ot:ottTaxonName": "Cryptanthus bromelioides", "^ot:treebaseOTUId": "Tl47667"}, "otu252643": {"^ot:originalLabel": "Lymania corallina", "^ot:ottId": 429411, "^ot:ottTaxonName": "Lymania corallina", "^ot:treebaseOTUId": "Tl47668"}, "otu252644": {"^ot:originalLabel": "Lymania smithii", "^ot:ottId": 955475, "^ot:ottTaxonName": "Lymania smithii", "^ot:treebaseOTUId": "Tl47669"}, "otu252645": {"^ot:originalLabel": "Araeococcus goeldianus", "^ot:ottId": 138981, "^ot:ottTaxonName": "Araeococcus goeldianus", "^ot:treebaseOTUId": "Tl47670"}, "otu252646": {"^ot:originalLabel": "Aechmea warasii", "^ot:ottId": 1017607, "^ot:ottTaxonName": "Aechmea warasii", "^ot:treebaseOTUId": "Tl47671"}, "otu252647": {"^ot:originalLabel": "Lymania azurea", "^ot:ottId": 429395, "^ot:ottTaxonName": "Lymania azurea", "^ot:treebaseOTUId": "Tl47672"}, "otu252648": {"^ot:originalLabel": "Aechmea carvalhoi", "^ot:ottId": 429398, "^ot:ottTaxonName": "Aechmea carvalhoi", "^ot:treebaseOTUId": "Tl47673"}}}}, "treesById": {"trees62": {"@otus": "otus62", "^ot:treeElementOrder": ["tree2877", "tree2878", "tree2879", "tree2880"], "treeById": {"tree2877": {"@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "Fig. 3", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node617603", "^ot:specifiedRoot": "", "^ot:tag": [], "edgeBySourceId": {"node617603": {"edge617604": {"@source": "node617603", "@target": "node617604"}, "edge617605": {"@source": "node617603", "@target": "node617605"}}, "node617605": {"edge617606": {"@source": "node617605", "@target": "node617606"}, "edge617647": {"@source": "node617605", "@target": "node617647"}}, "node617606": {"edge617607": {"@source": "node617606", "@target": "node617607"}, "edge617646": {"@source": "node617606", "@target": "node617646"}}, "node617607": {"edge617608": {"@source": "node617607", "@target": "node617608"}, "edge617641": {"@source": "node617607", "@target": "node617641"}}, "node617608": {"edge617609": {"@source": "node617608", "@target": "node617609"}, "edge617612": {"@source": "node617608", "@target": "node617612"}}, "node617609": {"edge617610": {"@source": "node617609", "@target": "node617610"}, "edge617611": {"@source": "node617609", "@target": "node617611"}}, "node617612": {"edge617613": {"@source": "node617612", "@target": "node617613"}, "edge617626": {"@source": "node617612", "@target": "node617626"}}, "node617613": {"edge617614": {"@source": "node617613", "@target": "node617614"}, "edge617621": {"@source": "node617613", "@target": "node617621"}}, "node617614": {"edge617615": {"@source": "node617614", "@target": "node617615"}, "edge617620": {"@source": "node617614", "@target": "node617620"}}, "node617615": {"edge617616": {"@source": "node617615", "@target": "node617616"}, "edge617619": {"@source": "node617615", "@target": "node617619"}}, "node617616": {"edge617617": {"@source": "node617616", "@target": "node617617"}, "edge617618": {"@source": "node617616", "@target": "node617618"}}, "node617621": {"edge617622": {"@source": "node617621", "@target": "node617622"}, "edge617623": {"@source": "node617621", "@target": "node617623"}}, "node617623": {"edge617624": {"@source": "node617623", "@target": "node617624"}, "edge617625": {"@source": "node617623", "@target": "node617625"}}, "node617626": {"edge617627": {"@source": "node617626", "@target": "node617627"}, "edge617628": {"@source": "node617626", "@target": "node617628"}}, "node617628": {"edge617629": {"@source": "node617628", "@target": "node617629"}, "edge617640": {"@source": "node617628", "@target": "node617640"}}, "node617629": {"edge617630": {"@source": "node617629", "@target": "node617630"}, "edge617633": {"@source": "node617629", "@target": "node617633"}}, "node617630": {"edge617631": {"@source": "node617630", "@target": "node617631"}, "edge617632": {"@source": "node617630", "@target": "node617632"}}, "node617633": {"edge617634": {"@source": "node617633", "@target": "node617634"}, "edge617639": {"@source": "node617633", "@target": "node617639"}}, "node617634": {"edge617635": {"@source": "node617634", "@target": "node617635"}, "edge617636": {"@source": "node617634", "@target": "node617636"}}, "node617636": {"edge617637": {"@source": "node617636", "@target": "node617637"}, "edge617638": {"@source": "node617636", "@target": "node617638"}}, "node617641": {"edge617642": {"@source": "node617641", "@target": "node617642"}, "edge617645": {"@source": "node617641", "@target": "node617645"}}, "node617642": {"edge617643": {"@source": "node617642", "@target": "node617643"}, "edge617644": {"@source": "node617642", "@target": "node617644"}}}, "nodeById": {"node617603": {"@root": true}, "node617604": {"@otu": "otu252632"}, "node617605": {}, "node617606": {}, "node617607": {}, "node617608": {}, "node617609": {}, "node617610": {"@otu": "otu252645"}, "node617611": {"@otu": "otu252627"}, "node617612": {}, "node617613": {}, "node617614": {}, "node617615": {}, "node617616": {}, "node617617": {"@otu": "otu252630"}, "node617618": {"@otu": "otu252628"}, "node617619": {"@otu": "otu252647"}, "node617620": {"@otu": "otu252644"}, "node617621": {}, "node617622": {"@otu": "otu252638"}, "node617623": {}, "node617624": {"@otu": "otu252640"}, "node617625": {"@otu": "otu252643"}, "node617626": {}, "node617627": {"@otu": "otu252641"}, "node617628": {}, "node617629": {}, "node617630": {}, "node617631": {"@otu": "otu252634"}, "node617632": {"@otu": "otu252629"}, "node617633": {}, "node617634": {}, "node617635": {"@otu": "otu252626"}, "node617636": {}, "node617637": {"@otu": "otu252646"}, "node617638": {"@otu": "otu252637"}, "node617639": {"@otu": "otu252633"}, "node617640": {"@otu": "otu252648"}, "node617641": {}, "node617642": {}, "node617643": {"@otu": "otu252631"}, "node617644": {"@otu": "otu252642"}, "node617645": {"@otu": "otu252636"}, "node617646": {"@otu": "otu252635"}, "node617647": {"@otu": "otu252639"}}}, "tree2878": {"@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "Fig. 1", "^ot:inGroupClade": "node617661", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node617648", "^ot:specifiedRoot": "node617648", "^ot:tag": [], "^ot:unrootedTree": false, "edgeBySourceId": {"node617648": {"edge617649": {"@source": "node617648", "@target": "node617649"}, "edge617686": {"@source": "node617648", "@target": "node617686"}}, "node617649": {"edge617650": {"@source": "node617649", "@target": "node617650"}, "edge617685": {"@source": "node617649", "@target": "node617685"}}, "node617650": {"edge617651": {"@source": "node617650", "@target": "node617651"}, "edge617656": {"@source": "node617650", "@target": "node617656"}}, "node617651": {"edge617652": {"@source": "node617651", "@target": "node617652"}, "edge617655": {"@source": "node617651", "@target": "node617655"}}, "node617652": {"edge617653": {"@source": "node617652", "@target": "node617653"}, "edge617654": {"@source": "node617652", "@target": "node617654"}}, "node617656": {"edge617657": {"@source": "node617656", "@target": "node617657"}, "edge617660": {"@source": "node617656", "@target": "node617660"}}, "node617657": {"edge617658": {"@source": "node617657", "@target": "node617658"}, "edge617659": {"@source": "node617657", "@target": "node617659"}}, "node617660": {"edge617661": {"@source": "node617660", "@target": "node617661"}, "edge617672": {"@source": "node617660", "@target": "node617672"}}, "node617661": {"edge617662": {"@source": "node617661", "@target": "node617662"}, "edge617665": {"@source": "node617661", "@target": "node617665"}, "edge617670": {"@source": "node617661", "@target": "node617670"}, "edge617671": {"@source": "node617661", "@target": "node617671"}}, "node617662": {"edge617663": {"@source": "node617662", "@target": "node617663"}, "edge617664": {"@source": "node617662", "@target": "node617664"}}, "node617665": {"edge617666": {"@source": "node617665", "@target": "node617666"}, "edge617667": {"@source": "node617665", "@target": "node617667"}}, "node617667": {"edge617668": {"@source": "node617667", "@target": "node617668"}, "edge617669": {"@source": "node617667", "@target": "node617669"}}, "node617672": {"edge617673": {"@source": "node617672", "@target": "node617673"}, "edge617684": {"@source": "node617672", "@target": "node617684"}}, "node617673": {"edge617674": {"@source": "node617673", "@target": "node617674"}, "edge617679": {"@source": "node617673", "@target": "node617679"}, "edge617682": {"@source": "node617673", "@target": "node617682"}, "edge617683": {"@source": "node617673", "@target": "node617683"}}, "node617674": {"edge617675": {"@source": "node617674", "@target": "node617675"}, "edge617676": {"@source": "node617674", "@target": "node617676"}}, "node617676": {"edge617677": {"@source": "node617676", "@target": "node617677"}, "edge617678": {"@source": "node617676", "@target": "node617678"}}, "node617679": {"edge617680": {"@source": "node617679", "@target": "node617680"}, "edge617681": {"@source": "node617679", "@target": "node617681"}}, "node617686": {"edge617687": {"@source": "node617686", "@target": "node617687"}, "edge617688": {"@source": "node617686", "@target": "node617688"}}}, "nodeById": {"node617648": {"@root": true}, "node617649": {}, "node617650": {}, "node617651": {}, "node617652": {}, "node617653": {"@otu": "otu252632"}, "node617654": {"@otu": "otu252639"}, "node617655": {"@otu": "otu252635"}, "node617656": {}, "node617657": {}, "node617658": {"@otu": "otu252645"}, "node617659": {"@otu": "otu252627"}, "node617660": {}, "node617661": {}, "node617662": {}, "node617663": {"@otu": "otu252630"}, "node617664": {"@otu": "otu252628"}, "node617665": {}, "node617666": {"@otu": "otu252638"}, "node617667": {}, "node617668": {"@otu": "otu252640"}, "node617669": {"@otu": "otu252643"}, "node617670": {"@otu": "otu252644"}, "node617671": {"@otu": "otu252647"}, "node617672": {}, "node617673": {}, "node617674": {}, "node617675": {"@otu": "otu252641"}, "node617676": {}, "node617677": {"@otu": "otu252646"}, "node617678": {"@otu": "otu252637"}, "node617679": {}, "node617680": {"@otu": "otu252634"}, "node617681": {"@otu": "otu252629"}, "node617682": {"@otu": "otu252626"}, "node617683": {"@otu": "otu252633"}, "node617684": {"@otu": "otu252648"}, "node617685": {"@otu": "otu252636"}, "node617686": {}, "node617687": {"@otu": "otu252631"}, "node617688": {"@otu": "otu252642"}}}, "tree2879": {"@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "Fig. 2", "^ot:inGroupClade": "node617690", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node617689", "^ot:specifiedRoot": "", "^ot:tag": [], "edgeBySourceId": {"node617689": {"edge617690": {"@source": "node617689", "@target": "node617690"}, "edge617719": {"@source": "node617689", "@target": "node617719"}}, "node617690": {"edge617691": {"@source": "node617690", "@target": "node617691"}, "edge617698": {"@source": "node617690", "@target": "node617698"}, "edge617701": {"@source": "node617690", "@target": "node617701"}, "edge617706": {"@source": "node617690", "@target": "node617706"}, "edge617707": {"@source": "node617690", "@target": "node617707"}, "edge617708": {"@source": "node617690", "@target": "node617708"}, "edge617709": {"@source": "node617690", "@target": "node617709"}, "edge617712": {"@source": "node617690", "@target": "node617712"}, "edge617713": {"@source": "node617690", "@target": "node617713"}, "edge617714": {"@source": "node617690", "@target": "node617714"}, "edge617715": {"@source": "node617690", "@target": "node617715"}, "edge617716": {"@source": "node617690", "@target": "node617716"}, "edge617717": {"@source": "node617690", "@target": "node617717"}, "edge617718": {"@source": "node617690", "@target": "node617718"}}, "node617691": {"edge617692": {"@source": "node617691", "@target": "node617692"}, "edge617697": {"@source": "node617691", "@target": "node617697"}}, "node617692": {"edge617693": {"@source": "node617692", "@target": "node617693"}, "edge617696": {"@source": "node617692", "@target": "node617696"}}, "node617693": {"edge617694": {"@source": "node617693", "@target": "node617694"}, "edge617695": {"@source": "node617693", "@target": "node617695"}}, "node617698": {"edge617699": {"@source": "node617698", "@target": "node617699"}, "edge617700": {"@source": "node617698", "@target": "node617700"}}, "node617701": {"edge617702": {"@source": "node617701", "@target": "node617702"}, "edge617705": {"@source": "node617701", "@target": "node617705"}}, "node617702": {"edge617703": {"@source": "node617702", "@target": "node617703"}, "edge617704": {"@source": "node617702", "@target": "node617704"}}, "node617709": {"edge617710": {"@source": "node617709", "@target": "node617710"}, "edge617711": {"@source": "node617709", "@target": "node617711"}}, "node617719": {"edge617720": {"@source": "node617719", "@target": "node617720"}, "edge617721": {"@source": "node617719", "@target": "node617721"}}}, "nodeById": {"node617689": {"@root": true}, "node617690": {}, "node617691": {}, "node617692": {}, "node617693": {}, "node617694": {"@otu": "otu252632"}, "node617695": {"@otu": "otu252635"}, "node617696": {"@otu": "otu252639"}, "node617697": {"@otu": "otu252636"}, "node617698": {}, "node617699": {"@otu": "otu252645"}, "node617700": {"@otu": "otu252627"}, "node617701": {}, "node617702": {}, "node617703": {"@otu": "otu252630"}, "node617704": {"@otu": "otu252628"}, "node617705": {"@otu": "otu252647"}, "node617706": {"@otu": "otu252638"}, "node617707": {"@otu": "otu252644"}, "node617708": {"@otu": "otu252641"}, "node617709": {}, "node617710": {"@otu": "otu252634"}, "node617711": {"@otu": "otu252629"}, "node617712": {"@otu": "otu252626"}, "node617713": {"@otu": "otu252646"}, "node617714": {"@otu": "otu252637"}, "node617715": {"@otu": "otu252633"}, "node617716": {"@otu": "otu252640"}, "node617717": {"@otu": "otu252643"}, "node617718": {"@otu": "otu252648"}, "node617719": {}, "node617720": {"@otu": "otu252631"}, "node617721": {"@otu": "otu252642"}}}, "tree2880": {"@xsi:type": "nex:FloatTree", "^ot:branchLengthDescription": "", "^ot:branchLengthMode": "", "^ot:branchLengthTimeUnit": "", "^ot:curatedType": "Fig. 4", "^ot:outGroupEdge": "", "^ot:rootNodeId": "node617722", "^ot:specifiedRoot": "", "^ot:tag": [], "edgeBySourceId": {"node617722": {"edge617723": {"@source": "node617722", "@target": "node617723"}, "edge617724": {"@source": "node617722", "@target": "node617724"}}, "node617724": {"edge617725": {"@source": "node617724", "@target": "node617725"}, "edge617763": {"@source": "node617724", "@target": "node617763"}}, "node617725": {"edge617726": {"@source": "node617725", "@target": "node617726"}, "edge617762": {"@source": "node617725", "@target": "node617762"}}, "node617726": {"edge617727": {"@source": "node617726", "@target": "node617727"}, "edge617761": {"@source": "node617726", "@target": "node617761"}}, "node617727": {"edge617728": {"@source": "node617727", "@target": "node617728"}, "edge617758": {"@source": "node617727", "@target": "node617758"}}, "node617728": {"edge617729": {"@source": "node617728", "@target": "node617729"}, "edge617732": {"@source": "node617728", "@target": "node617732"}}, "node617729": {"edge617730": {"@source": "node617729", "@target": "node617730"}, "edge617731": {"@source": "node617729", "@target": "node617731"}}, "node617732": {"edge617733": {"@source": "node617732", "@target": "node617733"}, "edge617746": {"@source": "node617732", "@target": "node617746"}}, "node617733": {"edge617734": {"@source": "node617733", "@target": "node617734"}, "edge617741": {"@source": "node617733", "@target": "node617741"}}, "node617734": {"edge617735": {"@source": "node617734", "@target": "node617735"}, "edge617740": {"@source": "node617734", "@target": "node617740"}}, "node617735": {"edge617736": {"@source": "node617735", "@target": "node617736"}, "edge617739": {"@source": "node617735", "@target": "node617739"}}, "node617736": {"edge617737": {"@source": "node617736", "@target": "node617737"}, "edge617738": {"@source": "node617736", "@target": "node617738"}}, "node617741": {"edge617742": {"@source": "node617741", "@target": "node617742"}, "edge617743": {"@source": "node617741", "@target": "node617743"}}, "node617743": {"edge617744": {"@source": "node617743", "@target": "node617744"}, "edge617745": {"@source": "node617743", "@target": "node617745"}}, "node617746": {"edge617747": {"@source": "node617746", "@target": "node617747"}, "edge617757": {"@source": "node617746", "@target": "node617757"}}, "node617747": {"edge617748": {"@source": "node617747", "@target": "node617748"}, "edge617749": {"@source": "node617747", "@target": "node617749"}, "edge617752": {"@source": "node617747", "@target": "node617752"}, "edge617756": {"@source": "node617747", "@target": "node617756"}}, "node617749": {"edge617750": {"@source": "node617749", "@target": "node617750"}, "edge617751": {"@source": "node617749", "@target": "node617751"}}, "node617752": {"edge617753": {"@source": "node617752", "@target": "node617753"}, "edge617754": {"@source": "node617752", "@target": "node617754"}, "edge617755": {"@source": "node617752", "@target": "node617755"}}, "node617758": {"edge617759": {"@source": "node617758", "@target": "node617759"}, "edge617760": {"@source": "node617758", "@target": "node617760"}}}, "nodeById": {"node617722": {"@root": true}, "node617723": {"@otu": "otu252632"}, "node617724": {}, "node617725": {}, "node617726": {}, "node617727": {}, "node617728": {}, "node617729": {}, "node617730": {"@otu": "otu252645"}, "node617731": {"@otu": "otu252627"}, "node617732": {}, "node617733": {}, "node617734": {}, "node617735": {}, "node617736": {}, "node617737": {"@otu": "otu252630"}, "node617738": {"@otu": "otu252628"}, "node617739": {"@otu": "otu252647"}, "node617740": {"@otu": "otu252644"}, "node617741": {}, "node617742": {"@otu": "otu252638"}, "node617743": {}, "node617744": {"@otu": "otu252640"}, "node617745": {"@otu": "otu252643"}, "node617746": {}, "node617747": {}, "node617748": {"@otu": "otu252641"}, "node617749": {}, "node617750": {"@otu": "otu252634"}, "node617751": {"@otu": "otu252629"}, "node617752": {}, "node617753": {"@otu": "otu252626"}, "node617754": {"@otu": "otu252646"}, "node617755": {"@otu": "otu252633"}, "node617756": {"@otu": "otu252637"}, "node617757": {"@otu": "otu252648"}, "node617758": {}, "node617759": {"@otu": "otu252631"}, "node617760": {"@otu": "otu252642"}, "node617761": {"@otu": "otu252636"}, "node617762": {"@otu": "otu252639"}, "node617763": {"@otu": "otu252635"}}}}}}}}, "branch2sha": {"master": "7ce37ceecc08fa457e4fd28aa6ea83357bd12b8a"}, "commentHTML": "", "duplicateStudyIDs": [], "shardName": "phylesystem-1", "versionHistory": [{"id": "d33fb39501605772a074dffc82affa5344ea9a94", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Wed, 11 Jun 2014 22:18:34 -0500", "date_ISO_8601": "2014-06-11 22:18:34 -0500", "relative_date": "12 years ago", "message_subject": "corrected study ids"}, {"id": "f8a738aeda20a73750847484e110a85c7a3e0a12", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 10 Jun 2014 23:36:42 -0500", "date_ISO_8601": "2014-06-10 23:36:42 -0500", "relative_date": "12 years ago", "message_subject": "Migrating info from gcmdr to nexsons", "message_body": "using peyotl d69c8b180fce7703c7203a0b51712eab57e2988c\ndev/decorate_pg_studies_with_gcmdr_info.py\nto set:\n  ^ot:candidateTreeForSynthesis\n  ^ot:specifiedRoot, and\n  ^ot:unrootedTree\nproperties based on the use of the trees for synthesis study\nlists in gcmdr commit 35bf307e72bed4f59724762dde4a12965abcea92"}, {"id": "593d6fbab385716dc0a12f3fc95133e8b7479b37", "author_name": "Mark T. Holder", "author_email": "mtholder@gmail.com", "date": "Tue, 29 Apr 2014 20:05:19 -0500", "date_ISO_8601": "2014-04-29 20:05:19 -0500", "relative_date": "12 years ago", "message_subject": "initial commit with phylografter files from 29 Apr, 2014"}]}